View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12581_low_2 (Length: 650)
Name: NF12581_low_2
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12581_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 573; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 573; E-Value: 0
Query Start/End: Original strand, 20 - 641
Target Start/End: Complemental strand, 34866052 - 34865431
Alignment:
| Q |
20 |
cattaaccaactcaaagacattgcattaacaagtcagaagtccatatcagagtgtgcagaaaaggggagctacttggcctccagacagacaatctttctg |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34866052 |
cattaaccaactcaaagacattgcattaacaagtcagaagtccatatcagagtgtgcagaaaaggggagctacttggcctccagacagacaatctttctg |
34865953 |
T |
|
| Q |
120 |
ataaagaaatctttggaggctccttcaaataatgattcgtcaagttcagaaggtgattaaagagtaagtaaatatttgatgctcctccnnnnnnngaata |
219 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
34865952 |
ataaagaaatctttggaggctccttcaaataacgattcgtcaagttctgaaggtgattaaagagtaagtaaatatttgatgctcctcctttttttgaata |
34865853 |
T |
|
| Q |
220 |
aaaatttgggatatttgttgatatgtttgtttacctccttatttgcatcgatagcagtatatttacattccatatcagtttttattgtattcaacgcata |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
34865852 |
aaaatttgggatatttgttgatatgtttgtttacctccttatttgcatcgatagcagtatatttacattccatatcagtttttattgtattcaacgtata |
34865753 |
T |
|
| Q |
320 |
tgatgaagatgatagaaatcatttaattttttaaataattttcattttggtgcaggctattgaaatcgtatgattttcatggtgtattctatgttacgca |
419 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
34865752 |
tgatgaagatgatagaaatcatttaattttttaaataattttcattttggtgcaggctattgaaatcatatgattttcatggtgtattcaatgttacgca |
34865653 |
T |
|
| Q |
420 |
aaaatatctcacggattccttatatataaatataaattattataaaagaaaagaacgggcagagtggcagcagggactggtgacggagacttgaagaaaa |
519 |
Q |
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| T |
34865652 |
aaaatatctcatggattccttatatataaatataaattattataaaagaaaagaacgggcagagtggcagcagggactggtgacggagacttgaagaaaa |
34865553 |
T |
|
| Q |
520 |
agtgtgtgatgatggatgatgacgcagttgactggctaaatcttcctcgagaattatggttagttattatatccatgaatttgaatccatttgatgttct |
619 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
34865552 |
agtgtgtgatgatggatgatgacgcagttgactggctaaatcttcctcgagaattatggttagttattatatccaagaatttgaatccatttgatgttct |
34865453 |
T |
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| Q |
620 |
tcgattccgtagtgtctgtgct |
641 |
Q |
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| T |
34865452 |
tcgattccgtagtgtctgtgct |
34865431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 24 - 102
Target Start/End: Complemental strand, 7948259 - 7948181
Alignment:
| Q |
24 |
aaccaactcaaagacattgcattaacaagtcagaagtccatatcagagtgtgcagaaaaggggagctacttggcctcca |
102 |
Q |
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||||||||||||||| |||| ||||| |||||||||||||||||||||| ||||||| | || || ||||||||||| |
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| T |
7948259 |
aaccaactcaaagacgttgccccaacaattcagaagtccatatcagagtgtacagaaaaagtgaactgcttggcctcca |
7948181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 4e-46; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 379 - 594
Target Start/End: Original strand, 51857864 - 51858077
Alignment:
| Q |
379 |
ttgaaatcgtatgattttcatggtgtattctatgttacgcaaaaa-tatctcacggattccttatatataaatataaattattataaaa--gaaaagaac |
475 |
Q |
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|||||||||||||||||||||||||||||| |||||| ||||||| |||||| |||||| | ||| |||||||||||| | |||| |||||||| |
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| T |
51857864 |
ttgaaatcgtatgattttcatggtgtattcaatgttatgcaaaaaatatctcgtggattcttcata----aatataaattatcaaaaaaaagaaaagaat |
51857959 |
T |
|
| Q |
476 |
gggcagagtggcagcagggactggtgacggagacttgaagaaaaagtgtgtgatgatggatgatgacgcagttgactggctaaatcttcctcgagaatta |
575 |
Q |
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| T |
51857960 |
gggcagagtagcagcaggaacagatg-cggagacttgaagaaagtgtgtgtgatgatagatgatgacacggttgattggctaaatcttcctcgagactta |
51858058 |
T |
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| Q |
576 |
tggttagttattatatcca |
594 |
Q |
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||||||||||||||||||| |
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| T |
51858059 |
tggttagttattatatcca |
51858077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 127 - 207
Target Start/End: Original strand, 51857703 - 51857783
Alignment:
| Q |
127 |
aatctttggaggctccttcaaataatgattcgtcaagttcagaaggtgattaaagagtaagtaaatatttgatgctcctcc |
207 |
Q |
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||||||||||||||||||||||||| || |||||||||| |||||||||||||||| |||||| || |||||| ||||| |
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| T |
51857703 |
aatctttggaggctccttcaaataacgaagtgtcaagttcacaaggtgattaaagagtgagtaaacatctgatgcccctcc |
51857783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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