View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12581_low_21 (Length: 240)
Name: NF12581_low_21
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12581_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 2018557 - 2018327
Alignment:
| Q |
1 |
tcaaggccgaaggaacggacggagagccagagagggttccatctctttgacagaacgctagtagcaacagcatccctcgtcggaaggaacgacagaatgt |
100 |
Q |
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| T |
2018557 |
tcaaggtcgaaggaacggaaggagagccagagtggtttccatctctttgacagaaggctagtagcaacagcatccctcgtcggaaggaacgacagaatgt |
2018458 |
T |
|
| Q |
101 |
gatacagaacgtcgtcaggtagtgattccatggttgtccttgttcacagcgaggtataagtgtgaaccctagttttatttttgtagggttaatattgtgc |
200 |
Q |
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| T |
2018457 |
gacacagaacgtcgtcaggtagtgattccatggttgttcttgttcacagcgaggtataagtgtgaaccctagttttatttttgtagggttaatagtgtgc |
2018358 |
T |
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| Q |
201 |
aagggttaattccgtaatctttggacgagac |
231 |
Q |
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| T |
2018357 |
aagggttaattccgtaatctttggacgagac |
2018327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 122
Target Start/End: Complemental strand, 2005699 - 2005585
Alignment:
| Q |
8 |
cgaaggaacggacggagagccagagagggttccatctctttgacagaacgctagtagcaacagcatccctcgtcggaaggaacgacagaatgtgatacag |
107 |
Q |
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| T |
2005699 |
cgaaggaacggagtgagagccaaagtggtttccatctctttgacagaaggctagtagcagacgcatctctcgtcggaaggcatgacagaatgtgacatcg |
2005600 |
T |
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| Q |
108 |
aacgtcgtcaggtag |
122 |
Q |
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| T |
2005599 |
aagatcgtcaggtag |
2005585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 10 - 119
Target Start/End: Complemental strand, 2011871 - 2011762
Alignment:
| Q |
10 |
aaggaacggacggagagccagagagggttccatctctttgacagaacgctagtagcaacagcatccctcgtcggaaggaacgacagaatgtgatacagaa |
109 |
Q |
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|||||||||| |||||||| || || |||||||||||||| |||| || |||||| ||||||| ||||| |||||||| || ||||||||| || ||| |
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| T |
2011871 |
aaggaacggagcgagagccaaagtggtttccatctctttgatagaagacttgtagcagcagcatctctcgttggaaggaatgagagaatgtgacaccgaa |
2011772 |
T |
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| Q |
110 |
cgtcgtcagg |
119 |
Q |
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| T |
2011771 |
catcgtcagg |
2011762 |
T |
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