View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12581_low_22 (Length: 228)
Name: NF12581_low_22
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12581_low_22 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 47446472 - 47446245
Alignment:
| Q |
1 |
tctccattattatgattttggtttatgaaggccaacttattgtcaccagttttgagaatgtgtgtcttaatatcctttatatactccaaaactgtaatgg |
100 |
Q |
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| T |
47446472 |
tctccattattatgattttggtttatgaaggccaacttattgtcaccagttttgagaatgtgtgtcttaatatcctttatatactccaaaactgtaatgg |
47446373 |
T |
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| Q |
101 |
acctatctacttctttttagaactgagaggatcttcactcgtggatgatttactcgtgcttatttgatatatttttctgattctttaatcttgtaagctt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47446372 |
acctatctacttctttttagaactgagaggatcttcactcgtggatgatttactcgtgcttatttgatatatttttctgattctttaatcttgtaagctt |
47446273 |
T |
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| Q |
201 |
cattgctctaatttatagtaaggtaatt |
228 |
Q |
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||||||||||| |||||||||||||||| |
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| T |
47446272 |
cattgctctaaattatagtaaggtaatt |
47446245 |
T |
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