View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12581_low_25 (Length: 213)
Name: NF12581_low_25
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12581_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 1e-98; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 37071980 - 37071799
Alignment:
| Q |
18 |
cagaatggcaatgataagattgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaacaatgagagtgcgttacatattgctg |
117 |
Q |
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| T |
37071980 |
cagaatggcaatgataagattgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaacaatgagagtgcgttacatattgctg |
37071881 |
T |
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| Q |
118 |
caagatgtggacacatctcaatcgttgaaaagctattgaaagcatatgctaatattgaacggcgtgatataagaacagcatg |
199 |
Q |
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| T |
37071880 |
caagatgtggacacatctcaatcgttgaaaagctattgaaagcatatgctaatattgaacggcgtgatataagaacagcatg |
37071799 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 22 - 199
Target Start/End: Complemental strand, 37081727 - 37081550
Alignment:
| Q |
22 |
atggcaatgataagattgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaacaatgagagtgcgttacatattgctgcaag |
121 |
Q |
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| T |
37081727 |
atggcaatgataagattgtgagtcttgtaattgaacatgctccaaaacttttgttcgaggttaatgaaaacaacgagagtgcgttacatattgctgcaag |
37081628 |
T |
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| Q |
122 |
atgtggacacatctcaatcgttgaaaagctattgaaagcatatgctaatattgaacggcgtgatataagaacagcatg |
199 |
Q |
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| T |
37081627 |
aggtggacacatctcaatcgttgaaaagctattggcagcttatgctaattttgaacggcatgatataaaaacggcatg |
37081550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 36934797 - 36934950
Alignment:
| Q |
36 |
attgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaacaatgagagtgcgttacatattgctgcaagatgtggacacatct |
135 |
Q |
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| T |
36934797 |
attgtgaatcttgtaattgaacatgctccaaaacttttgttcaagtttaacgaaaacaatgatagtgccttacatgttgctgctagatatggacacatct |
36934896 |
T |
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| Q |
136 |
caatcgttgaaaagctatt-gaaagcatatgctaatattgaacggcgtgatataa |
189 |
Q |
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| T |
36934897 |
caaccgttgaaaagctattagcaag-ttatgctaatattgaacggagtgagataa |
36934950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 36952263 - 36952416
Alignment:
| Q |
36 |
attgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaacaatgagagtgcgttacatattgctgcaagatgtggacacatct |
135 |
Q |
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| T |
36952263 |
attgtgaatcttgtagttgaacatgctccaaaacttttgttcacatttaacaaaaacaatgatagtgccttacatgttgctgcaagaggtggacacatcc |
36952362 |
T |
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| Q |
136 |
caatcgttgaaaagctatt-gaaagcatatgctaatattgaacggcgtgatataa |
189 |
Q |
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| T |
36952363 |
aaaccgttaaaaagctattagcaag-ttatgctaatattgaacggcatgatataa |
36952416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 36963681 - 36963834
Alignment:
| Q |
36 |
attgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaacaatgagagtgcgttacatattgctgcaagatgtggacacatct |
135 |
Q |
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| T |
36963681 |
attgtgaatcttgtaattgaacatgctccaaaacttttgttcacattcaacaaaaacaatgatagccccttacatgttgctgcaagaggtggacacatct |
36963780 |
T |
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| Q |
136 |
caatcgttgaaaagctatt-gaaagcatatgctaatattgaacggcgtgatataa |
189 |
Q |
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| T |
36963781 |
caaccgttaaaacactattagcaag-ttatactaatattgaacggcgtgatataa |
36963834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 36 - 189
Target Start/End: Original strand, 36946358 - 36946511
Alignment:
| Q |
36 |
attgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaacaatgagagtgcgttacatattgctgcaagatgtggacacatct |
135 |
Q |
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| T |
36946358 |
attgtgaatcttgtaattgaacattctccaaaacttttgttcacattcaacaaaaacaatgatagccccttacatgttgctgcaagaggtggacacatct |
36946457 |
T |
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| Q |
136 |
caatcgttgaaaagctatt-gaaagcatatgctaatattgaacggcgtgatataa |
189 |
Q |
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| T |
36946458 |
caaccgttaaaacactattagcaag-ttatactaatattgaacggcgtgatataa |
36946511 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 36 - 152
Target Start/End: Complemental strand, 12495772 - 12495656
Alignment:
| Q |
36 |
attgtgagtcttgtagttgaacatgctccaacacttttgttcgagtttaatgaaaacaatgagagtgcgttacatattgctgcaagatgtggacacatct |
135 |
Q |
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| T |
12495772 |
attgtgaatcttgtaattgaacgtgttccaaaacttttgtttaaatttaacaaaaacaatgatagtgcatttcatgttgctgcaaatggtggacacattt |
12495673 |
T |
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| Q |
136 |
caatcgttgaaaagcta |
152 |
Q |
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| T |
12495672 |
caaccgttgaaaagcta |
12495656 |
T |
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