View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12581_low_3 (Length: 526)
Name: NF12581_low_3
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12581_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 475; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 475; E-Value: 0
Query Start/End: Original strand, 12 - 510
Target Start/End: Original strand, 21131515 - 21132013
Alignment:
| Q |
12 |
atgaaacataccaattttttgacaagttttttcgactgtaaacacgaatattaccgtcagaatccatgctcaaccttctttgcataaccatgccataatc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21131515 |
atgaaacataccaattttttgacaagttttttcgactgtaaacacgaatattaccgtcagaatccatgctcaaccttctttgcataaccatgccataatc |
21131614 |
T |
|
| Q |
112 |
atatgtggaaaaagtgtaattatcagatgaaatgaactttccaagagaatctaagaaagcaattctactactattgtaattgaaccttccagcttcccaa |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21131615 |
atatgtggaaaaagtgtaattatcagatgaaatgaactttccaagagaatctaagaaagcaattctactactattgtaattgaaccttccagcttcccaa |
21131714 |
T |
|
| Q |
212 |
cttaacaaccaaggtggtggccaatatgtgcttgaaacaccaggaccatcataatcgagacgaatgatattgttatcatcaaagaaacacttatagaagc |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21131715 |
cttaacaaccaaggtggtggccaatatgtgcttgaaacatcaggaccatcataatcgagacgaatgatattgttatcatcaaagaaacacttatagaagc |
21131814 |
T |
|
| Q |
312 |
cagaagaatgattactctggcttcttgaagaaacaagttttgtgtatctagtgagtggttgattaggaaggagagtatttgttgggaaatcatagctttg |
411 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
21131815 |
cagaagaatgattactctggcttcttgaagaaacaagttttgtgtatctagtgagtggttgattaggaaggagagtattggttgggaaatcatagctttg |
21131914 |
T |
|
| Q |
412 |
ccacaaaatggtagttccttgaagctcacgtaacacaagattaccatcttctttgagatacaactctaatggagtatctgatgccgtgtttgatgacca |
510 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| ||||| |
|
|
| T |
21131915 |
ccacaaaatggtacttccttgaagctcacgtaacacaagattaccatcttctttgagatacaactctaacggagcatctgatgccgtgtttgaagacca |
21132013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 12 - 510
Target Start/End: Original strand, 21112555 - 21113053
Alignment:
| Q |
12 |
atgaaacataccaattttttgacaagttttttcgactgtaaacacgaatattaccgtcagaatccatgctcaaccttctttgcataaccatgccataatc |
111 |
Q |
| |
|
|||||||||||||||||| | ||||||||||||| |||||||| ||||||||||| |||||||||| | | || ||||||||||||||||| |||||||| |
|
|
| T |
21112555 |
atgaaacataccaattttctaacaagttttttcggctgtaaactcgaatattaccatcagaatccaaggttaatcttctttgcataaccataccataatc |
21112654 |
T |
|
| Q |
112 |
atatgtggaaaaagtgtaattatcagatgaaatgaactttccaagagaatctaagaaagcaattctactactattgtaattgaaccttccagcttcccaa |
211 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||||||||| |||||||||||||| ||||||||||| |||| |
|
|
| T |
21112655 |
atatgtggaaaaaaagtaattatcagatgatatgaactttccaagagaatccaacaaagcaattctagtactattgtaattggtccttccagcttgccaa |
21112754 |
T |
|
| Q |
212 |
cttaacaaccaaggtggtggccaatatgtgcttgaaacaccaggaccatcataatcgagacgaatgatattgttatcatcaaagaaacacttatagaagc |
311 |
Q |
| |
|
|||||||| ||| ||||||||||||||||||||||| | ||||||||||||||||||||||||| | |||||||||||||||||| ||||||| |||| |
|
|
| T |
21112755 |
cttaacaaaaaagatggtggccaatatgtgcttgaaatatcaggaccatcataatcgagacgaataacattgttatcatcaaagaacaacttataaaagc |
21112854 |
T |
|
| Q |
312 |
cagaagaatgattactctggcttcttgaagaaacaagttttgtgtatctagtgagtggttgattaggaaggagagtatttgttgggaaatcatagctttg |
411 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
21112855 |
cagaagaatgattactatggcttcttgaagaaacaaggtttgtatatctagtgagaggttgattaggaaggagagtatttgtcgggaaatcatagctttg |
21112954 |
T |
|
| Q |
412 |
ccacaaaatggtagttccttgaagctcacgtaacacaagattaccatcttctttgagatacaactctaatggagtatctgatgccgtgtttgatgacca |
510 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
21112955 |
ccacaagatggtaggtccttgaagctcacgtaacacaagattcccatcttctctaagatacaactctaatggagcatctgatgccgtgtttgaagacca |
21113053 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 510
Target Start/End: Original strand, 18659677 - 18660175
Alignment:
| Q |
12 |
atgaaacataccaattttttgacaagttttttcgactgtaaacacgaatattaccgtcagaatccatgctcaaccttctttgcataaccatgccataatc |
111 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||| |||| |||||| |||||||||||| | || |||||||||| ||||| |||||||| |
|
|
| T |
18659677 |
atgaaacatgccaatttgctgacaagttttttcgactgtaaactcgaacattaccatcagaatccatggttaattttctttgcatgaccataccataatc |
18659776 |
T |
|
| Q |
112 |
atatgtggaaaaagtgtaattatcagatgaaatgaactttccaagagaatctaagaaagcaattctactactattgtaattgaaccttccagcttcccaa |
211 |
Q |
| |
|
||| ||||||||| |||||||||||||||| |||||||||||||||||||| || || |||||||||||||||||||||||| | |||||||||| ||| |
|
|
| T |
18659777 |
ataagtggaaaaaatgtaattatcagatgatatgaactttccaagagaatccaacaatgcaattctactactattgtaattggatcttccagcttgccag |
18659876 |
T |
|
| Q |
212 |
cttaacaaccaaggtggtggccaatatgtgcttgaaacaccaggaccatcataatcgagacgaatgatattgttatcatcaaagaaacacttatagaagc |
311 |
Q |
| |
|
|||||||| ||| |||||||||||||| ||||||||| ||||||||||||||| ||||||||| | ||||||||||||||||||| |||||||||||| |
|
|
| T |
18659877 |
cttaacaataaagcaggtggccaatatgtacttgaaacatcaggaccatcataattgagacgaataacattgttatcatcaaagaaaaacttatagaagc |
18659976 |
T |
|
| Q |
312 |
cagaagaatgattactctggcttcttgaagaaacaagttttgtgtatctagtgagtggttgattaggaaggagagtatttgttgggaaatcatagctttg |
411 |
Q |
| |
|
|||||||||||||||| |||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18659977 |
cagaagaatgattactttggctttttgaagaaacaagttttatgtatctagtgagaggttgattaggaaggagagtatttgttgggaaatcatagctttg |
18660076 |
T |
|
| Q |
412 |
ccacaaaatggtagttccttgaagctcacgtaacacaagattaccatcttctttgagatacaactctaatggagtatctgatgccgtgtttgatgacca |
510 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || || |||||| |||||||| ||||| |
|
|
| T |
18660077 |
ccacaagatggtagttccttgaagctcacgtaatacaagattaccatcttctttgagatacaactctaatgaagcatttgatgctgtgtttgaagacca |
18660175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 12 - 502
Target Start/End: Original strand, 21123949 - 21124442
Alignment:
| Q |
12 |
atgaaacataccaattttttgacaagttttttcgactgtaaacacgaatattaccgtcagaatccatgctcaaccttctttgcataaccatgccataatc |
111 |
Q |
| |
|
|||||||||||||||||| ||||| |||||||||||| ||||| |||| |||||| ||| |||||||| | || |||||||||||||||| |||||||| |
|
|
| T |
21123949 |
atgaaacataccaattttctgacatgttttttcgactataaactcgaacattaccatcataatccatggttaattttctttgcataaccataccataatc |
21124048 |
T |
|
| Q |
112 |
atatgtggaaaaagtgtaattatcagatgaaatgaactttccaagagaatctaagaaagcaattctactactattgtaattgaaccttccagcttcccaa |
211 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||| | |||||||||||||| | |||||| ||| |||| |
|
|
| T |
21124049 |
ataagtggaaaaagtgtaattatcagatgatatgaactttccaagagaatccaacaaagcaattatggtactattgtaattggatcttccaacttgccaa |
21124148 |
T |
|
| Q |
212 |
cttaacaaccaaggtggtggccaatatgtgcttgaaacaccaggaccatcataatcgagacgaatgatattgttatcatcaaagaaacacttatagaagc |
311 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||||||||| |||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||| |
|
|
| T |
21124149 |
cttagtaacaaagaaggtggccaatatgtgcttgaaacatcagggccatcataatcgagacgaataacattgttatcatcaaagaaacacttatagaagc |
21124248 |
T |
|
| Q |
312 |
cagaagaatgattactctggcttcttgaagaaacaagttttgtg---tatctagtgagtggttgattaggaaggagagtatttgttgggaaatcatagct |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21124249 |
cagaagaatgattactctggcttcttgaagaaataagttttgtgtattatctagtgagaggttgattaggaaggagagaatttgttgggaaatcatagct |
21124348 |
T |
|
| Q |
409 |
ttgccacaaaatggtagttccttgaagctcacgtaacacaagattaccatcttctttgagatacaactctaatggagtatctgatgccgtgttt |
502 |
Q |
| |
|
|| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
21124349 |
ttcccccaaaatggtagttctttgaagctcacgtaacacaagattaccatcttctttgagatacaactctaatggagcatctgatgctgtgttt |
21124442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 286 - 483
Target Start/End: Complemental strand, 21097423 - 21097226
Alignment:
| Q |
286 |
atcatcaaagaaacacttatagaagccagaagaatgattactctggcttcttgaagaaacaagttttgtgtatctagtgagtggttgattaggaaggaga |
385 |
Q |
| |
|
|||||||||||| || ||||||||||||||||||||||||||| ||| ||||||| ||||| ||||| ||||| || || |||||| ||||||||| |
|
|
| T |
21097423 |
atcatcaaagaagaacatatagaagccagaagaatgattactctcacttattgaagatacaagctttgtatatcttgtaagaggttgacctggaaggaga |
21097324 |
T |
|
| Q |
386 |
gtatttgttgggaaatcatagctttgccacaaaatggtagttccttgaagctcacgtaacacaagattaccatcttctttgagatacaactctaatgg |
483 |
Q |
| |
|
|||| |||||| | ||| | || |||||||||||| | |||||||||||||||| ||||||||||| ||||| | |||||||| ||| |||||||| |
|
|
| T |
21097323 |
gtatctgttggagagtcaaaactctgccacaaaatgttgattccttgaagctcacgcaacacaagatttccatcatttttgagatgcaattctaatgg |
21097226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 286 - 479
Target Start/End: Complemental strand, 21107042 - 21106849
Alignment:
| Q |
286 |
atcatcaaagaaacacttatagaagccagaagaatgattactctggcttcttgaagaaacaagttttgtgtatctagtgagtggttgattaggaaggaga |
385 |
Q |
| |
|
|||||||||| | |||| |||||||||| |||||||||||||| |||||||||| ||||| ||||| ||||| || || |||||| ||||||||| |
|
|
| T |
21107042 |
atcatcaaagtagaacttgtagaagccagtagaatgattactctcacttcttgaagctacaagctttgtatatcttgtaagaggttgacctggaaggaga |
21106943 |
T |
|
| Q |
386 |
gtatttgttgggaaatcatagctttgccacaaaatggtagttccttgaagctcacgtaacacaagattaccatcttctttgagatacaactcta |
479 |
Q |
| |
|
|||| |||||| | ||| | || ||||||||||| || |||||||||||||||| ||||||||||| ||||| |||||||||| |||||||| |
|
|
| T |
21106942 |
gtatctgttggagagtcaaaactctgccacaaaattgtgattccttgaagctcacgcaacacaagatttccatcatctttgagatgcaactcta |
21106849 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 510
Target Start/End: Complemental strand, 39131221 - 39130723
Alignment:
| Q |
12 |
atgaaacataccaattttttgacaagttttttcgactgtaaacacgaatattaccgtcagaatccatgctcaaccttctttgcataaccatgccataatc |
111 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||||||||||||||||||||| |||||||||||| | || ||||||||||||||| | || ||||| |
|
|
| T |
39131221 |
atgaaacataccaattttctaacaaactttttcgactgtaaacacgaatattaccatcagaatccatggttaatcttctttgcataaccgtaccgtaatc |
39131122 |
T |
|
| Q |
112 |
atatgtggaaaaagtgtaattatcagatgaaatgaactttccaagagaatctaagaaagcaattctactactattgtaattgaaccttccagcttcccaa |
211 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||||| ||||||| || |||||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
39131121 |
atatgtggaaaaaatgtaattatcagatgaaataaactttccatgagaatccaacaaagcaattctactactattataattgaaccttccagcttgccaa |
39131022 |
T |
|
| Q |
212 |
cttaacaaccaaggtggtggccaatatgtgcttgaaacaccaggaccatcataatcgagacgaatgatattgttatcatcaaagaaacacttatagaagc |
311 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||| ||||||||||||| || |||||||| ||||||||||||||||| || |||||||||||| |
|
|
| T |
39131021 |
cttaacaaccatggtggtggccaatatgtgcttgaaacatcaggaccatcatattctagacgaataatattgttatcatcaaaaaacaacttatagaagc |
39130922 |
T |
|
| Q |
312 |
cagaagaatgattactctggcttcttgaagaaacaagttttgtgtatctagtgagtggttgattaggaaggagagtatttgttgggaaatcatagctttg |
411 |
Q |
| |
|
||||||||||||||||||| |||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
39130921 |
cagaagaatgattactctgacttcttgaggaaccaagttttgtgtatctagtgagaggttgattaggaaggagagtatttgttggaaaatcatagctttg |
39130822 |
T |
|
| Q |
412 |
ccacaaaatggtagttccttgaagctcacgtaacacaagattaccatcttctttgagatacaactctaatggagtatctgatgccgtgtttgatgacca |
510 |
Q |
| |
|
|||||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| | |||| | |||||||| ||||| |
|
|
| T |
39130821 |
ccacaagatcgtagtaccttgaagctcacgtaacacaagattgccatcttcttttagatacaactctagtggagtgtttgattctgtgtttgaagacca |
39130723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 26700107 - 26700156
Alignment:
| Q |
370 |
ttgattaggaaggagagtatttgttgggaaatcatagctttgccacaaaa |
419 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| | ||||||||||||| |
|
|
| T |
26700107 |
ttgatcaggaaggagagtatctgttgggaaatcaaaactttgccacaaaa |
26700156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 419
Target Start/End: Original strand, 26735264 - 26735313
Alignment:
| Q |
370 |
ttgattaggaaggagagtatttgttgggaaatcatagctttgccacaaaa |
419 |
Q |
| |
|
||||| |||||||||||||| ||||||||||||| | ||||||||||||| |
|
|
| T |
26735264 |
ttgatcaggaaggagagtatctgttgggaaatcaaaactttgccacaaaa |
26735313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 419
Target Start/End: Complemental strand, 26693308 - 26693259
Alignment:
| Q |
370 |
ttgattaggaaggagagtatttgttgggaaatcatagctttgccacaaaa |
419 |
Q |
| |
|
||||| ||||||||| |||| |||||| |||||| ||||||||||||||| |
|
|
| T |
26693308 |
ttgatcaggaaggagggtatctgttggaaaatcaaagctttgccacaaaa |
26693259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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