View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12581_low_4 (Length: 477)
Name: NF12581_low_4
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12581_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 1 - 459
Target Start/End: Complemental strand, 1328754 - 1328296
Alignment:
| Q |
1 |
tataacgaatatgtgcgcacaaatgcagagaagtcccacgaaccagattgtgagctgtcacgaaaatcggacatgttgagaaggcgagtcccacgtcgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328754 |
tataacgaatatgtgcgcacaaatgcagagaagtcccacgaaccagattgtgagctgtcacgaaaatcggacatgttgagaaggcgagtcccacgtcgag |
1328655 |
T |
|
| Q |
101 |
ttgagaagaatatctcttgctcataagcagggtcaccttctgctagaagcctttgaatcaaaataagagttttcaaagccactgtccaatttttagtctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328654 |
ttgagaagaatatctcttgctcataagcagggtcaccttcttctagaagcctttgaatcaaaataagagttttcaaagccactgtccaatttttagtctt |
1328555 |
T |
|
| Q |
201 |
gctgagacgcctcgagagggtattaacacaagcactaatgaatgcgcgagagtaacatgttaaactcagaatctcccgtatatatttctcttcagccgga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328554 |
gctgagacgcctcgagagggtattaacacaagcactaatgaatgcgcgagagtaacatgttaaactcagaatctcccgtatatatttctcttcagccgga |
1328455 |
T |
|
| Q |
301 |
tattcatcgtgcctagtcgctttcacaatagctacatcaaggtcagcaagtgaggtgctgcttcccaccattgctagtcctatgcttgtctgatccttta |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1328454 |
tattcatcgtgcctagtcgctttcacaatagctacatcaaggtcagcaagtgaggtgctgcttcccaccattgctagtcctatgcttgtctgatccttta |
1328355 |
T |
|
| Q |
401 |
ctgccccaaaggcttttcttaatgagtttggaggcatactttatttttgctcctatgct |
459 |
Q |
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| T |
1328354 |
ctgccccaaaggcttttcttaatgagtttggaggcatactttatttttgctcctatgct |
1328296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 63 - 424
Target Start/End: Complemental strand, 1924015 - 1923654
Alignment:
| Q |
63 |
aaaatcggacatgttgagaaggcgagtcccacgtcgagttgagaagaatatctcttgctcataagcagggtcaccttctgctagaagcctttgaatcaaa |
162 |
Q |
| |
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|||||| |||||||| ||||| ||||| |||||| |||||||||||||||| ||||| ||||||||| | ||||| || || | | ||||||||||||| |
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| T |
1924015 |
aaaatcagacatgttaagaagtcgagttccacgttgagttgagaagaatatttcttgttcataagcacgatcaccatcagccaacaacctttgaatcaaa |
1923916 |
T |
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| Q |
163 |
ataagagttttcaaagccactgtccaatttttagtcttgctgagacgcctcgagagggtattaacacaagcactaatgaatgcgcgagagtaacatgtta |
262 |
Q |
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| ||| ||||| ||||| ||||||||| | | |||||| | | ||| | ||||| || || ||||||| ||| |||||||| || ||||||||||||| |
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| T |
1923915 |
acaagtgtttttaaagcaactgtccaactgcttgtcttgatcaaacgtttagagagtgtgttcacacaagaacttatgaatgctcgtgagtaacatgtta |
1923816 |
T |
|
| Q |
263 |
aactcagaatctcccgtatatatttctcttcagccggatattcatcgtgcctagtcgctttcacaatagctacatcaaggtcagcaagtgaggtgctgct |
362 |
Q |
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| || |||||||| | || | | | |||||||| |||| |||||| || | || ||||| ||||| ||||| | ||| ||| | | ||||| ||||| |
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| T |
1923815 |
agcttagaatctctctaatgtgtctttcttcagctggattttcatcatgttttgttgctttaacaatggctacttgaagatcacctattgaggcactgct |
1923716 |
T |
|
| Q |
363 |
tcccaccattgctagtcctatgcttgtctgatcctttactgccccaaaggcttttcttaatg |
424 |
Q |
| |
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||| || |||||| ||||||||||| ||||| || ||||| |||| |||| ||||||||| |
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| T |
1923715 |
tccaacttttgctatgcctatgcttgtttgatctttcactgctccaatggctcttcttaatg |
1923654 |
T |
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