View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12581_low_5 (Length: 451)
Name: NF12581_low_5
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12581_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 15 - 446
Target Start/End: Original strand, 45835646 - 45836077
Alignment:
| Q |
15 |
acatcaaaaacaaggtatgattagatcctattcgtccctgtcctatcctgaccattaaacgagacataaagttctagatgcagttgaatacattattcgc |
114 |
Q |
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| T |
45835646 |
acatcaaaaacaaggtatgattagatcctattcgtccctgtcctatcctgaccattaaacgagacataaagttctagatgcagttgaatacattattcac |
45835745 |
T |
|
| Q |
115 |
tattcaatgctttggttgtgattttttatatgactcttgttctatagatatggtcaaagttgggaaagaacacaattttataaacgagtaggttccttcg |
214 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45835746 |
tattcaatgctttggttgtgattttttctatgactcttgttctatagatatgatcaaagttgggaaagaacacaattttataaacgagtaggttcctacg |
45835845 |
T |
|
| Q |
215 |
ttgttcagtagtacggcagatttagatgagttactgtaggtaaaaatataattgtaggtaccatttgaactataaaagatgacaagataaccactttatt |
314 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
45835846 |
ttgttcagtagtacgacagatttagatgagttactgtaggtaaaaatataattgtaggtaccatttgaactatgaaagatgacaagataaccactttatt |
45835945 |
T |
|
| Q |
315 |
aaataggtggaaaagcaacaagttaccagtgaaaattctggtaatgatttcagatagttctgttgtttaagacgtgtcatatatctaattactactttat |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45835946 |
aaataggtggaaaagcaacaagttaccagtgaaaattctgctaatgatttcagatagttctgttgtttaagacgtgtcatatatctaattactactttat |
45836045 |
T |
|
| Q |
415 |
acatgctgacatgattgtatattttctctgct |
446 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
45836046 |
acatgctgacatgattgtatattttctctgct |
45836077 |
T |
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