View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12581_low_6 (Length: 425)
Name: NF12581_low_6
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12581_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 195 - 409
Target Start/End: Complemental strand, 38846968 - 38846754
Alignment:
| Q |
195 |
gcaatcaaaatcacttgctttttgattcctaagaagcgcatatacaaaaaggaaagagcagtggattatcaactaagcatctctcatgtccaccgtatct |
294 |
Q |
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| T |
38846968 |
gcaatcaaaatcacttgctttttgattcctaagaagcgcatatacaaaaaggaaagagcagtggattatcaactaagcatctctcatgtccaccgtatct |
38846869 |
T |
|
| Q |
295 |
atttaatcactcattatttttctttgactacaatcaatgaataaaaacatcccatttgttttagtgcttatatttttcatgtgccaaattattttcttca |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
38846868 |
atttaatcactcattatttttctttgactacaatcaatgaataaaaacatcccatttgttttagtgcttatatttttcatgtaccaaattattttcttca |
38846769 |
T |
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| Q |
395 |
tatatgtgtcaccct |
409 |
Q |
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||||||||||||||| |
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| T |
38846768 |
tatatgtgtcaccct |
38846754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 61
Target Start/End: Original strand, 20989069 - 20989111
Alignment:
| Q |
19 |
aaatgacgataaatatagaaaatttatacatgtaagtggagga |
61 |
Q |
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| T |
20989069 |
aaatgacaataactatagaaaatttatacatataagtggagga |
20989111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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