View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12581_low_7 (Length: 382)

Name: NF12581_low_7
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12581_low_7
NF12581_low_7
[»] chr1 (4 HSPs)
chr1 (10-369)||(18438442-18438796)
chr1 (10-369)||(18449300-18449654)
chr1 (10-369)||(18454393-18454747)
chr1 (170-221)||(42080703-42080754)
[»] chr2 (6 HSPs)
chr2 (43-335)||(31320127-31320430)
chr2 (160-365)||(9446963-9447180)
chr2 (163-221)||(21949909-21949967)
chr2 (279-324)||(38346612-38346657)
chr2 (173-221)||(14555896-14555944)
chr2 (161-221)||(13698129-13698189)
[»] chr5 (3 HSPs)
chr5 (90-365)||(31609957-31610249)
chr5 (167-222)||(11888191-11888246)
chr5 (170-221)||(33417438-33417489)
[»] chr7 (4 HSPs)
chr7 (173-221)||(8425057-8425105)
chr7 (161-315)||(30559269-30559434)
chr7 (170-221)||(49094557-49094608)
chr7 (170-221)||(38836146-38836197)
[»] chr6 (1 HSPs)
chr6 (170-222)||(6982841-6982893)
[»] chr4 (3 HSPs)
chr4 (170-221)||(2048991-2049042)
chr4 (170-221)||(39735820-39735871)
chr4 (172-221)||(3958957-3959006)
[»] scaffold0141 (1 HSPs)
scaffold0141 (173-221)||(16545-16593)
[»] chr8 (1 HSPs)
chr8 (175-220)||(19168189-19168234)
[»] chr3 (1 HSPs)
chr3 (161-221)||(3830691-3830751)


Alignment Details
Target: chr1 (Bit Score: 315; Significance: 1e-177; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 369
Target Start/End: Original strand, 18438442 - 18438796
Alignment:
Q  10 atgagatggacatcgatgcttctgatggcacacattggaccctgaaactgactctgaagctcatcacaactctcatttcccagatacatttaaccatcta 109  Q
    ||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18438442 atgagatggacactgatgcttctgatggcaca--ttggaccctgaaactgactctgaagctcatcacaactctcatttcctagatacatttaaccatcta 18438539  T
Q  110 gtttcaccacatgaaactgagaagaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtga 209  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18438540 gtttcaccacatgaaactgtgaagaagagtaaaggaggcagtcataagaatcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtga 18438639  T
Q  210 tcaaaagcaatctgactgtcttgttgaaagttccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18438640 tcaaaagcaatctgactgtcttgttgaaagttccatatcttgca---gttgttcttatttgagttcaacttctgttattttagatggttgctgaatctat 18438736  T
Q  310 cttagtgggatagattgtattctttttactactagatctgttgctggaatggtttggtct 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18438737 cttagtgggatagattgtattctttttactactagatctgttgctggaatggtttggtct 18438796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 369
Target Start/End: Original strand, 18449300 - 18449654
Alignment:
Q  10 atgagatggacatcgatgcttctgatggcacacattggaccctgaaactgactctgaagctcatcacaactctcatttcccagatacatttaaccatcta 109  Q
    ||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18449300 atgagatggacactgatgcttctgatggcaca--ttggaccctgaaactgactctgaagctcatcacaactctcatttcctagatacatttaaccatcta 18449397  T
Q  110 gtttcaccacatgaaactgagaagaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtga 209  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18449398 gtttcaccacatgaaactgtgaagaagagtaaaggaggcagtcataagaatcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtga 18449497  T
Q  210 tcaaaagcaatctgactgtcttgttgaaagttccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18449498 tcaaaagcaatctgactgtcttgttgaaagttccatatcttgca---gttgttcttatttgagttcaacttctgttattttagatggttgctgaatctat 18449594  T
Q  310 cttagtgggatagattgtattctttttactactagatctgttgctggaatggtttggtct 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18449595 cttagtgggatagattgtattctttttactactagatctgttgctggaatggtttggtct 18449654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 10 - 369
Target Start/End: Original strand, 18454393 - 18454747
Alignment:
Q  10 atgagatggacatcgatgcttctgatggcacacattggaccctgaaactgactctgaagctcatcacaactctcatttcccagatacatttaaccatcta 109  Q
    ||||||||||||  ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  18454393 atgagatggacactgatgcttctgatggcaca--ttggaccctgaaactgactctgaagctcatcacaactctcatttcctagatacatttaaccatcta 18454490  T
Q  110 gtttcaccacatgaaactgagaagaagagtaaaggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtga 209  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18454491 gtttcaccacatgaaactgtgaagaagagtaaaggaggcagtcataagaatcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtga 18454590  T
Q  210 tcaaaagcaatctgactgtcttgttgaaagttccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctat 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18454591 tcaaaagcaatctgactgtcttgttgaaagttccatatcttgca---gttgttcttatttgagttcaacttctgttattttagatggttgctgaatctat 18454687  T
Q  310 cttagtgggatagattgtattctttttactactagatctgttgctggaatggtttggtct 369  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18454688 cttagtgggatagattgtattctttttactactagatctgttgctggaatggtttggtct 18454747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 42080754 - 42080703
Alignment:
Q  170 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 221  Q
    |||||||||||||| ||||  ||||||||||||||||| |||||||||||||    
T  42080754 agtagtgagcacatccaaactcgttccaaaaagggtgtaatcaaaagcaatc 42080703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 190; Significance: 1e-103; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 43 - 335
Target Start/End: Original strand, 31320127 - 31320430
Alignment:
Q  43 attggaccctgaaactgactctgaagctcatcacaactctcatttcccagatacatttaaccatctagtttcaccacatgaaactgagaagaagagtaaa 142  Q
    ||||||||||||||||||||  ||||||||| |||||||||||| ||||||| ||| ||| ||||||||||||||||||||||||| |||||||||||||    
T  31320127 attggaccctgaaactgacttcgaagctcataacaactctcattccccagatgcatctaaacatctagtttcaccacatgaaactgtgaagaagagtaaa 31320226  T
Q  143 ggaggcagtcataagaagcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc-----------tgactgtctt 231  Q
     ||||||| ||| |||||||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||           ||| ||||||    
T  31320227 agaggcagacatcagaagcaatacactagtagtgagctcatacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgattgtctt 31320326  T
Q  232 gttgaaagttccatatcttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagtgggatagattgtattc 331  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  31320327 gttgaaagttccatatcttgcagttgttgttcttatttgggttcatcttctgctattctagatggttgctgaatctatcttagtgggatagattgtattc 31320426  T
Q  332 tttt 335  Q
    ||||    
T  31320427 tttt 31320430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 160 - 365
Target Start/End: Original strand, 9446963 - 9447180
Alignment:
Q  160 gcaaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc-----------tgactgtcttgttgaaagttccatatc 248  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||           |||||||||||||||||||||||||||    
T  9446963 gcaaaacactagtagtgagcacacacaaacgcgttccaaaaagggtgtgatcaaaagcaatcccaaatatatgtgactgtcttgttgaaagttccatatc 9447062  T
Q  249 ttgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatctta-gtgggatagattgtattctttttactactagatc 347  Q
    ||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||||||||||| | |||||| |||||| ||||||||||||||| ||    
T  9447063 ttgcagttgttgttcttatgtgggttcaacttctgttattttggatggtggctgaatctatcttaggggggatatattgtactctttttactactagttc 9447162  T
Q  348 tgttgctggaatggtttg 365  Q
    |  ||||||| |||||||    
T  9447163 tactgctggactggtttg 9447180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 21949967 - 21949909
Alignment:
Q  163 aaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 221  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||| |||||||||||||    
T  21949967 aaacactagtagtgagcacatacaaactcgttctaaaaagggtgtaatcaaaagcaatc 21949909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 38346657 - 38346612
Alignment:
Q  279 ttctgttattttagatggttgctgaatctatcttagtgggatagat 324  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||    
T  38346657 ttctgttattttggttggttgctgaatctatcttggtgggatagat 38346612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 14555896 - 14555944
Alignment:
Q  173 agtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 221  Q
    ||||| || |||||||  |||||||||||||||||||||||||||||||    
T  14555896 agtgatcatatacaaactcgttccaaaaagggtgtgatcaaaagcaatc 14555944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 13698129 - 13698189
Alignment:
Q  161 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 221  Q
    |||| ||| |||||||||||||| ||||   ||||||  ||||||||||||||||||||||    
T  13698129 caaagcacaagtagtgagcacattcaaactggttccatgaagggtgtgatcaaaagcaatc 13698189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 151; Significance: 8e-80; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 90 - 365
Target Start/End: Original strand, 31609957 - 31610249
Alignment:
Q  90 cagatacatttaaccatctagtttcaccacatgaaactgagaagaagagtaaaggaggcagtcataa-----gaagcaaaacactagtagtgagcacata 184  Q
    ||||| ||| |||| |||||||||||||||||||||||  ||||||||||||| ||||| |||||||     ||||||||||||||||||||||||||||    
T  31609957 cagatgcatctaactatctagtttcaccacatgaaactatgaagaagagtaaaagaggcggtcataatataagaagcaaaacactagtagtgagcacata 31610056  T
Q  185 caaaagcgttccaaaaagggtgtgatcaaaagcaatct-----------gactgtcttgttgaaagttccatatcttgcagttgttgttcttatttgagt 273  Q
    |||| |||||| |||||||||||||||||||||||||            ||||||||||||||||||||||||| ||| |||||||||||||||||| ||    
T  31610057 caaacgcgttctaaaaagggtgtgatcaaaagcaatcccaaatatatgcgactgtcttgttgaaagttccatattttgtagttgttgttcttatttgggt 31610156  T
Q  274 tcaacttctgttattttagatggttgctgaatctatcttagtgggatagattgtattc-tttttactactagatctgttgctggaatggtttg 365  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| ||||||||||||| |||| ||||||| |||||||    
T  31610157 tcaacttctgatattttagatggttgctgaatctatcttagtgtgatcgattgtattcttttttactactagttctgctgctggattggtttg 31610249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 222
Target Start/End: Complemental strand, 11888246 - 11888191
Alignment:
Q  167 actagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatct 222  Q
    |||||||||||||| |||||||  |||||||| |||||||||||||||||||||||    
T  11888246 actagtagtgagcatatacaaattcgttccaagaagggtgtgatcaaaagcaatct 11888191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 33417438 - 33417489
Alignment:
Q  170 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 221  Q
    |||||||||||||||||||  ||||| ||||||||||| |||||||| ||||    
T  33417438 agtagtgagcacatacaaattcgttctaaaaagggtgtaatcaaaagtaatc 33417489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 173 - 221
Target Start/End: Original strand, 8425057 - 8425105
Alignment:
Q  173 agtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 221  Q
    ||||||||||||||||  |||||||| ||||||||||||||||||||||    
T  8425057 agtgagcacatacaaactcgttccaagaagggtgtgatcaaaagcaatc 8425105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 315
Target Start/End: Complemental strand, 30559434 - 30559269
Alignment:
Q  161 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc-----------tgactgtcttgttgaaagttccatatct 249  Q
    |||| ||| ||| ||||||||||| |||   |||||||||||||||| |||||||||||||           |||| ||| |||||| |||||  |||      
T  30559434 caaagcacaagtcgtgagcacatagaaacttgttccaaaaagggtgttatcaaaagcaatcccaaagatttgtgacggtcatgttgacagttctgtattc 30559335  T
Q  250 tgcagttgttgttcttatttgagttcaacttctgttattttagatggttgctgaatctatcttagt 315  Q
    |||||||| ||||| ||||||  |||  ||||||||||||| | ||||||||||||||||||||||    
T  30559334 tgcagttgctgttcatatttggtttcggcttctgttattttgggtggttgctgaatctatcttagt 30559269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 221
Target Start/End: Complemental strand, 49094608 - 49094557
Alignment:
Q  170 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 221  Q
    |||||||||||||||||||  ||||||||||| ||||| |||||||||||||    
T  49094608 agtagtgagcacatacaaacacgttccaaaaaaggtgttatcaaaagcaatc 49094557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 38836146 - 38836197
Alignment:
Q  170 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 221  Q
    ||||||||||| |||||||  ||||||||||| ||||| |||||||||||||    
T  38836146 agtagtgagcatatacaaactcgttccaaaaatggtgttatcaaaagcaatc 38836197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 170 - 222
Target Start/End: Original strand, 6982841 - 6982893
Alignment:
Q  170 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatct 222  Q
    |||||||||||||||||||  ||||| ||||||||||| ||||||||||||||    
T  6982841 agtagtgagcacatacaaactcgttcaaaaaagggtgtaatcaaaagcaatct 6982893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 2048991 - 2049042
Alignment:
Q  170 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 221  Q
    ||||||||||| |||||||  ||||||||||||||||| |||||||||||||    
T  2048991 agtagtgagcatatacaaactcgttccaaaaagggtgttatcaaaagcaatc 2049042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 170 - 221
Target Start/End: Original strand, 39735820 - 39735871
Alignment:
Q  170 agtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 221  Q
    |||||||||||||||||||  |||||||| |||||||| |||||||||||||    
T  39735820 agtagtgagcacatacaaactcgttccaagaagggtgtaatcaaaagcaatc 39735871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 172 - 221
Target Start/End: Complemental strand, 3959006 - 3958957
Alignment:
Q  172 tagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 221  Q
    |||||||||||||||||  ||||| ||||||||||| |||||||||||||    
T  3959006 tagtgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaatc 3958957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 221
Target Start/End: Complemental strand, 16593 - 16545
Alignment:
Q  173 agtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 221  Q
    |||||||||||| |||  |||||||| ||||||||||||||||||||||    
T  16593 agtgagcacatataaactcgttccaagaagggtgtgatcaaaagcaatc 16545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 19168189 - 19168234
Alignment:
Q  175 tgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaat 220  Q
    ||||||||||||||  ||||| ||||||||||| ||||||||||||    
T  19168189 tgagcacatacaaactcgttctaaaaagggtgtcatcaaaagcaat 19168234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 221
Target Start/End: Complemental strand, 3830751 - 3830691
Alignment:
Q  161 caaaacactagtagtgagcacatacaaaagcgttccaaaaagggtgtgatcaaaagcaatc 221  Q
    |||| ||| |||||||||||||| ||||  |||||||  ||| ||||||||||||||||||    
T  3830751 caaagcacaagtagtgagcacattcaaactcgttccatgaagagtgtgatcaaaagcaatc 3830691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University