View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12581_low_9 (Length: 337)
Name: NF12581_low_9
Description: NF12581
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12581_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 8259470 - 8259152
Alignment:
| Q |
1 |
gtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatggtggagg |
100 |
Q |
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| T |
8259470 |
gtaatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatggtggagg |
8259371 |
T |
|
| Q |
101 |
gtcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagcatgcagtgttggg |
200 |
Q |
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| T |
8259370 |
gtagcgtgagggggagcattgtgtgcacaggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagcatgcagtgttggg |
8259271 |
T |
|
| Q |
201 |
gctaatgcgtgcggccagtgtgcaactggccgcacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgacttgtaagttgttg |
300 |
Q |
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| T |
8259270 |
gctaatgcgtgcggccagtgtgcaactggccacacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgacttgtaagttgtcg |
8259171 |
T |
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| Q |
301 |
gggatgagcgaagagaaag |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
8259170 |
gggatgagcgaagagaaag |
8259152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 2 - 309
Target Start/End: Complemental strand, 8308928 - 8308621
Alignment:
| Q |
2 |
taatggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatggtggaggg |
101 |
Q |
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| T |
8308928 |
taatggaacttgatatgtcccaacttgaccgtttatttgccgtcaatgtccgtggaatgtcgttgtgtgtgaaacacgcggcgcgtgcaatggtagaggg |
8308829 |
T |
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| Q |
102 |
tcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagcatgcagtgttgggg |
201 |
Q |
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| T |
8308828 |
tcacgtaagggggagcatagtgtgtacagggagtgttggcggtagccggggaggctcgaggtcaacggattacacgatgtcaaagcatgcagtattgggg |
8308729 |
T |
|
| Q |
202 |
ctaatgcgtgcggccagtgtgcaactggccgcacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgacttgtaagttgttgg |
301 |
Q |
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||||||||||||||||| || ||||| |||||||||||||||||||| |||| ||| ||||| ||||| | |||||||| ||||||||||||||||||| |
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| T |
8308728 |
ctaatgcgtgcggccagcgtacaactagccgcacacgggataagagtgaactctgtctcgccgaatgggttggcaacacctttgacttgtaagttgttgg |
8308629 |
T |
|
| Q |
302 |
ggatgagc |
309 |
Q |
| |
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| |||||| |
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| T |
8308628 |
gaatgagc |
8308621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 4 - 318
Target Start/End: Complemental strand, 8257159 - 8256845
Alignment:
| Q |
4 |
atggaacttgatatgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtc |
103 |
Q |
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| T |
8257159 |
atggaacttgacatgtcccaatttgaccgtttatttgcggtcaatgttcaaggaatggcgttgtgtgtgaaacatgcagcacgtgcaatggtggagggtc |
8257060 |
T |
|
| Q |
104 |
gcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagcatgcagtgttggggct |
203 |
Q |
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|| | |||||||| || || ||||| || ||||||||| || | |||| || | ||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
8257059 |
gcataagggggagtatcgtatgcacagggagtgttagctgtcgtcaaggaggccccaggtcaacggactacacaatgtcaaagcatgcagtgttgggact |
8256960 |
T |
|
| Q |
204 |
aatgcgtgcggccagtgtgcaactggccgcacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgacttgtaagttgttgggg |
303 |
Q |
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|||||||||||| |||||||||||||||||||| || ||| ||||||||||||||||||| | |||||| || ||||| |||||||||||| | |||||| |
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| T |
8256959 |
aatgcgtgcggctagtgtgcaactggccgcacatggaatacgagtcaactgtgtttcgccgagtggactggcgacacctttgacttgtaagcttttgggg |
8256860 |
T |
|
| Q |
304 |
atgagcgaagagaaa |
318 |
Q |
| |
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|||||||| |||||| |
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| T |
8256859 |
atgagcgaggagaaa |
8256845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 8289857 - 8289580
Alignment:
| Q |
16 |
atgtcccaacttgaccgtttatttggcgtcaatgttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtcgcgtgaggggga |
115 |
Q |
| |
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||||||||||| ||||||||||| |||||||||| || |||||||||||||||||||| || || | ||| ||||||||||| ||| | ||||||| |
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| T |
8289857 |
atgtcccaactagaccgtttattcacaatcaatgttcgaggaatggcattgtgtgtgaaacatgccgcacatgctatggtggaggggcgcattaggggga |
8289758 |
T |
|
| Q |
116 |
gcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgaggtcaacggattacacaatgtcaaagcatgcagtgttggggctaatgcgtgcggc |
215 |
Q |
| |
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| |||||||||||||| |||||| | |||| ||| | |||||||||||||||||| ||||||||||| ||||| || |||||||||||||| || |
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| T |
8289757 |
gtattgtgtgcacggggagtgttcacagtagtcatggattcctgaggtcaacggattacacgatgtcaaagcacgcagtattagggctaatgcgtgcagc |
8289658 |
T |
|
| Q |
216 |
cagtgtgcaactggccgcacacgggataagagtcaactgtgtttcgccaaatggactagcaacaccattgacttgtaa |
293 |
Q |
| |
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||||||||||||||| |||||||| |||||||| |||||||| || || ||||||||||| ||||| ||||||||||| |
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| T |
8289657 |
cagtgtgcaactggctgcacacggaataagagtgaactgtgtctcaccgaatggactagcgacacctttgacttgtaa |
8289580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 62 - 288
Target Start/End: Complemental strand, 8261997 - 8261771
Alignment:
| Q |
62 |
cattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtcgcgtgagggggagcattgtgtgcacgggaagtgttagcggtagcgtaggaagctcgag |
161 |
Q |
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|||||||||||||| ||||||| ||||| ||||||||||| ||||||||||| |||||||||||||| | || || |||||| ||| || ||| |
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| T |
8261997 |
cattgtgtgtgaaatacgcggcacgtgcgatggtggaggggcgcgtgaggggtagcattgtgtgcacagcgagcgtattgggtagccaaggtgtcttgag |
8261898 |
T |
|
| Q |
162 |
gtcaacggattacacaatgtcaaagcatgcagtgttggggctaatgcgtgcggccagtgtgcaactggccgcacacgggataagagtcaactgtgtttcg |
261 |
Q |
| |
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|| ||| ||||||||||| || ||||||||| | | ||| | ||||| | || ||||||||||| || | ||||||||||||| || ||||| ||| |
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| T |
8261897 |
gttaaccgattacacaatatcgaagcatgcaataatagggttgatgcgctcagcgagtgtgcaacttgcaaaatacgggataagagtgaattgtgtctcg |
8261798 |
T |
|
| Q |
262 |
ccaaatggactagcaacaccattgact |
288 |
Q |
| |
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||||||||| ||||||||||||||||| |
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| T |
8261797 |
ccaaatggattagcaacaccattgact |
8261771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 128
Target Start/End: Complemental strand, 8325002 - 8324923
Alignment:
| Q |
49 |
gttcgtgggatggcattgtgtgtgaaacacgcggcgcgtgcaatggtggagggtcgcgtgagggggagcattgtgtgcac |
128 |
Q |
| |
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||||| || ||||||||||| |||||||| ||||| ||||| |||||||| || |||||||||| |||||||||||||| |
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| T |
8325002 |
gttcgaggaatggcattgtgcgtgaaacatgcggcacgtgcgatggtggacgggtgcgtgaggggtagcattgtgtgcac |
8324923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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