View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12582_high_12 (Length: 228)
Name: NF12582_high_12
Description: NF12582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12582_high_12 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 617143 - 616920
Alignment:
| Q |
1 |
tcgaaaaataattacgatgaatgttgaactttttacactcatgcatgatgtttgtttggtaaaagaaaagttgaagtttcactagaatagttagataaca |
100 |
Q |
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| T |
617143 |
tcgaaaaataattacgatgaatgtagaacttt--acactcatgcatgatgtttgtttggtaaaagaaaagttgaagtttcactagaatagatagataaca |
617046 |
T |
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| Q |
101 |
agaaattagtgcttttgtattgctatgacttttggagtttgttgcgtatgaacattatcatttataattggtttggttgttgtattaatattttcttact |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||| |
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| T |
617045 |
agaaattagtgctattgtattgctatgacttttggagtttgttgcgtatgaacattatcatt--aaattggtttggttgttgttttaatattttcttact |
616948 |
T |
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| Q |
201 |
attaagaaccaattttataactgcaggc |
228 |
Q |
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|||||||| ||||||||||||||||||| |
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| T |
616947 |
attaagaagcaattttataactgcaggc |
616920 |
T |
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