View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12582_high_6 (Length: 365)
Name: NF12582_high_6
Description: NF12582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12582_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 88 - 355
Target Start/End: Complemental strand, 27403542 - 27403276
Alignment:
| Q |
88 |
agtggatcgcgtcgatgaaagctgatgacatacttcctccaaagacacaagcattcattcacactatccccttatcaacaaaacctactcttggtaacat |
187 |
Q |
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| T |
27403542 |
agtgtatcgcgtcaatgaaagctgatgacatatttcctccaaagacacaagcattcattcacactatccccttatcaacaaaacctactcttggtaacat |
27403443 |
T |
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| Q |
188 |
atattttaaaaaactctaatctattgaatcataagccttttcaaaatcaacttttaaaattagacattctctattactcctctttaactatcatcacacc |
287 |
Q |
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|||||| ||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27403442 |
atatttaaaaaaactctaatctattgaatc-taagtcttttcaaaatcaatttttaaaattagacattctctattactcctctttaactatcatcacacc |
27403344 |
T |
|
| Q |
288 |
atccaccaagtatgtcccctttaagaatgtcgattgtgattttgaaattatagaattcatcacctttg |
355 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27403343 |
atccaccaagtatgtcccctttaagaatgtcgattgtgattttgaaattatagaattcatcacctttg |
27403276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 113 - 355
Target Start/End: Original strand, 9875198 - 9875460
Alignment:
| Q |
113 |
tgacatacttcctccaaagacacaagcattcattcacactatccccttatcaacaaaacctactcttggtaacatatattttaaaaaactctaatctatt |
212 |
Q |
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||||||||| ||||| |||| |||||| ||| ||| ||||| |||||||||| |||| | |||| |||||||||| | |||||||| |||| | |
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| T |
9875198 |
tgacatactccctccgaagatacaagctttcgctcatgttatccacttatcaacataacccaatcttcgtaacatatactccaaaaaacttcaatccacc |
9875297 |
T |
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| Q |
213 |
gaatcataagccttttcaaaatcaacttttaaaattagacattctctattactcctct--------------------ttaactatcatcacaccatcca |
292 |
Q |
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| T |
9875298 |
gaatcataagccttttcaaaatcaaattttaacatcagacattctctattactcctctatgccaaatccaccacctcattaactatcatcacaccaccca |
9875397 |
T |
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| Q |
293 |
ccaagtatgtcccctttaagaatgtcgattgtgattttgaaattatagaattcatcacctttg |
355 |
Q |
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|||| ||| ||| ||||||||| | |||||||||||||||||| |||||||||||| |||||| |
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| T |
9875398 |
ccaaatatctcctctttaagaaagccgattgtgattttgaaataatagaattcatcgcctttg |
9875460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 201 - 241
Target Start/End: Original strand, 39435742 - 39435782
Alignment:
| Q |
201 |
ctctaatctattgaatcataagccttttcaaaatcaacttt |
241 |
Q |
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| T |
39435742 |
ctctaatctattgaatcatatgccttttcaaaattaacttt |
39435782 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 212 - 241
Target Start/End: Complemental strand, 16175468 - 16175439
Alignment:
| Q |
212 |
tgaatcataagccttttcaaaatcaacttt |
241 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
16175468 |
tgaatcataagccttttcaaaatcaacttt |
16175439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 241
Target Start/End: Original strand, 15014993 - 15015021
Alignment:
| Q |
213 |
gaatcataagccttttcaaaatcaacttt |
241 |
Q |
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| T |
15014993 |
gaatcataagccttttcaaaatcaacttt |
15015021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 213 - 241
Target Start/End: Original strand, 17189355 - 17189383
Alignment:
| Q |
213 |
gaatcataagccttttcaaaatcaacttt |
241 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
17189355 |
gaatcataagccttttcaaaatcaacttt |
17189383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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