View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12582_low_1 (Length: 504)
Name: NF12582_low_1
Description: NF12582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12582_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 17 - 498
Target Start/End: Complemental strand, 34987 - 34512
Alignment:
| Q |
17 |
gtgtgcaggctgtgagatggatttgtgcgaatctcctccaaaggctaaggaaaaagattgtgttgttcctgtaactcctgaagttgtgaaagagaatgct |
116 |
Q |
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| T |
34987 |
gtgtgcaggctgtgagatggatttgtgcgaatctcctccgaaggctaaggaaaaagattgtgttgttcctgtaactcctgaagttgtgaaagagaatgct |
34888 |
T |
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| Q |
117 |
gattttgaatttcaatcccctctcactctcacactcacgctggtcaggaaacaacttaatgggactttaagcattaatgattctcacaatcacagccctc |
216 |
Q |
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|||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
34887 |
gattttgaatttcaatcccctctcac------actcacgctgatcaggaaacaacttaatgggactttaagcatcaatgattctcacaatcacagccctc |
34794 |
T |
|
| Q |
217 |
gaacacctaaggatgttgttttcgactcctttgcaaaggatactcgcgatgaattcaggagctctgctgtccgccgacttcgtttttgttcctctgctca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34793 |
gaacacctaaggatgttgttttcgactcctttgcaaaggatactcgcgatgaattcaggagctctgctgtccgccgacttcgtttttgttcctctgctca |
34694 |
T |
|
| Q |
317 |
caatcatgaatatgattctctttcagaccaacatatctttgaatctgtctatgataatctcttacacttcattctttcaaagcaaatggaggaggaggag |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34693 |
caatcatgaatatgattctctttcagaccaacatatctttgaatctgtctatgataatctcttacacttcattctttcaaagcaaatggaggaggaggag |
34594 |
T |
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| Q |
417 |
gggtatcttcctccaatctcaaatatacaacagtgtgattctgatgatgatcgttgttgtaagtcacctccatctctgctcc |
498 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34593 |
gggtatcttcctccaatctcaaatatacaacagtgtgattctgatgatgatcgttgttgtaagtcacctccatccctgctcc |
34512 |
T |
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