View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12582_low_11 (Length: 250)
Name: NF12582_low_11
Description: NF12582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12582_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 11484066 - 11484292
Alignment:
| Q |
19 |
gatcattcattgcattggtccacacgctagaatttatctatcattgaaacttcaaagatgaaaattgtgcaacttttctttgtataattattattttgtc |
118 |
Q |
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| T |
11484066 |
gatcattcattgcattggtccacacgctagaatttatttatagttgaaacttcaaagatgaaaattgtgcaacttttctttgtatatttattattttgtc |
11484165 |
T |
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| Q |
119 |
agatgtagatacaattattatgactactattcattcatccaaccatatgcattgccaaccacccaaaaacagtactgttatcattttcaattcattcata |
218 |
Q |
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| T |
11484166 |
agatgtagatacaattattattactactattcattcatccaactatatgcattgccaaccacccaaaaatagtactgttatcattatcaattcattcata |
11484265 |
T |
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| Q |
219 |
tcaaagtcttcttgagtctctgctcct |
245 |
Q |
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|| |||||||||||||||| ||||||| |
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| T |
11484266 |
tccaagtcttcttgagtctttgctcct |
11484292 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 26798336 - 26798377
Alignment:
| Q |
85 |
gtgcaacttttctttgtataattattattttgtcagatgtag |
126 |
Q |
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| T |
26798336 |
gtgcaacatttctttgtatatttattattttgtcagatgtag |
26798377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 26801252 - 26801285
Alignment:
| Q |
93 |
tttctttgtataattattattttgtcagatgtag |
126 |
Q |
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| T |
26801252 |
tttctttgtatatttattattttgtcagatgtag |
26801285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 26808802 - 26808835
Alignment:
| Q |
93 |
tttctttgtataattattattttgtcagatgtag |
126 |
Q |
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|||||||||||| ||||||||||||||||||||| |
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| T |
26808802 |
tttctttgtatatttattattttgtcagatgtag |
26808835 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 26816192 - 26816225
Alignment:
| Q |
93 |
tttctttgtataattattattttgtcagatgtag |
126 |
Q |
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|
|||||||||||| ||||||||||||||||||||| |
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| T |
26816192 |
tttctttgtatatttattattttgtcagatgtag |
26816225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 26823829 - 26823862
Alignment:
| Q |
93 |
tttctttgtataattattattttgtcagatgtag |
126 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
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|
| T |
26823829 |
tttctttgtatatttattattttgtcagatgtag |
26823862 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 10218865 - 10218906
Alignment:
| Q |
85 |
gtgcaacttttctttgtataattattattttgtcagatgtag |
126 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
10218865 |
gtgcaacatttctttgtatatttattattttgtcagatgtag |
10218906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 85 - 126
Target Start/End: Original strand, 10255774 - 10255815
Alignment:
| Q |
85 |
gtgcaacttttctttgtataattattattttgtcagatgtag |
126 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||| |
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| T |
10255774 |
gtgcaacatttctttgtatatttattattttgtcagatgtag |
10255815 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 93 - 126
Target Start/End: Original strand, 10227875 - 10227908
Alignment:
| Q |
93 |
tttctttgtataattattattttgtcagatgtag |
126 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| |
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| T |
10227875 |
tttctttgtatatttattattttgtcagatgtag |
10227908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 10499740 - 10499780
Alignment:
| Q |
84 |
tgtgcaacttttctttgtataattattattttgtcagatgt |
124 |
Q |
| |
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|||| |||||||||||||||| ||||||||| ||||||||| |
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| T |
10499740 |
tgtgaaacttttctttgtatatttattatttagtcagatgt |
10499780 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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