View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12582_low_2 (Length: 494)
Name: NF12582_low_2
Description: NF12582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12582_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 26006905 - 26007170
Alignment:
| Q |
1 |
tcaagccaaattatgtggagtcgtaacattttgaatcttggatgttagagtgacatggagtccacgtcaagtgtcacatcttcatttaactcatcacatc |
100 |
Q |
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| T |
26006905 |
tcaagccaaattatgcggagtcataacattttgaatcttggatgttagagtaacatggagtccacgtcaagtgtcacatcttcatttaacttatcacatc |
26007004 |
T |
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| Q |
101 |
aatgccgcaaacaattgatcttattaatggaaagatctttcgggtcaaaattggtacttggtatctaggtagtcaatcataaatagtagcgcaaccgtcg |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||| ||| |
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| T |
26007005 |
aatgccacaaacaattgatcttattaatggaaagatctttcgggtcaaaattggtacttgatatttaggtagtcaatcacaaatagtagcgcaaccatcg |
26007104 |
T |
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| Q |
201 |
accccaaaagtggaatagcgggtagtgggattgcccggattgataattttttgaataagttacatg |
266 |
Q |
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| T |
26007105 |
accccaaaagtggaatagcggatagtgggattgcctggattgataattttttgaataagttacatg |
26007170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 327 - 490
Target Start/End: Original strand, 26007732 - 26007895
Alignment:
| Q |
327 |
tcgtgaaatattcataaatcataacacaagttttgttcaaaacactcaaacattcacaagtcttaatcaaaacatgacatcgaatttcaaatacaaacaa |
426 |
Q |
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||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
26007732 |
tcgtgaaatattcataaatgagaacacaagttttgttcaaaacactcaaacattcacaagtcttaatcaaaacatgacatcaaatttcaaatacaaacaa |
26007831 |
T |
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| Q |
427 |
aagtcaaggattggctgggatcgcaaatggatcttctccatcatggttttcctctgtgctgctc |
490 |
Q |
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| T |
26007832 |
aaatcaaggattggccgggatcgcaaatggatcttctccgtcatggttttcctctgagctgctc |
26007895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 330 - 449
Target Start/End: Original strand, 44717030 - 44717149
Alignment:
| Q |
330 |
tgaaatattcataaatcataacacaagttttgttcaaaacactcaaacattcacaagtcttaatcaaaacatgacatcgaatttcaaatacaaacaaaag |
429 |
Q |
| |
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||||| |||||||||||| ||||||||| || ||||||||||| | ||||| ||||||||||||||||||| ||||| |||| ||||||| ||||||| |
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| T |
44717030 |
tgaaacattcataaatcaaaacacaagtcttaatcaaaacactctagcattcccaagtcttaatcaaaacattacatccaattccaaataccaacaaaat |
44717129 |
T |
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| Q |
430 |
tcaaggattggctgggatcg |
449 |
Q |
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| T |
44717130 |
tcaaggattggccgggatcg |
44717149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 374 - 448
Target Start/End: Original strand, 30717803 - 30717877
Alignment:
| Q |
374 |
aaacattcacaagtcttaatcaaaacatgacatcgaatttcaaatacaaacaaaagtcaaggattggctgggatc |
448 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| |||| |||| | |||| ||||||||||||||| |||||| |
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| T |
30717803 |
aaacattcacaagtcttaatcaaaacattacatccaattccaaactccaacacaagtcaaggattggccgggatc |
30717877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 30717653 - 30717698
Alignment:
| Q |
199 |
cgaccccaaaagtggaatagcgggtagtgggattgcccggattgat |
244 |
Q |
| |
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| T |
30717653 |
cgaccccaaaagtgggatagcgggtagcgggatcgccgggattgat |
30717698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 330 - 379
Target Start/End: Original strand, 44901472 - 44901521
Alignment:
| Q |
330 |
tgaaatattcataaatcataacacaagttttgttcaaaacactcaaacat |
379 |
Q |
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||||| |||||||||||| ||||||||| || ||||||||||||||||| |
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| T |
44901472 |
tgaaacattcataaatcaaaacacaagtcttaatcaaaacactcaaacat |
44901521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 56 - 88
Target Start/End: Original strand, 31111341 - 31111373
Alignment:
| Q |
56 |
tggagtccacgtcaagtgtcacatcttcattta |
88 |
Q |
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||||||||||||||||| ||||||||||||||| |
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| T |
31111341 |
tggagtccacgtcaagtatcacatcttcattta |
31111373 |
T |
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