View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12582_low_3 (Length: 414)
Name: NF12582_low_3
Description: NF12582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12582_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 3 - 401
Target Start/End: Original strand, 3427618 - 3428017
Alignment:
| Q |
3 |
tggagaagcaaaggcaaaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtggt |
102 |
Q |
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||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427618 |
tggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtggt |
3427717 |
T |
|
| Q |
103 |
tcttgttcctctttagggttgtattggttactattattaccactcaatctgatcacttggcgtcttggtaattttctatgtctagaatatttttgttgtt |
202 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3427718 |
tcttgttcctctttagggttgttttggttactattattaccactcaatgtgatcacttggcgtcttgataattttctatgtctagaatatttttgttgtt |
3427817 |
T |
|
| Q |
203 |
tttgtgaaaatggataggaagaaggggaaacctttgagttggaagagacattgattgagttaatgaaagtaagtggtgagatagatgccgccatggttta |
302 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||| |
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| T |
3427818 |
tttgtgaaaatggataggaagaaggggaaatctttgagttggaagagacattgattgagtgaatgaaagcaaggggtgagatagatgccgccatggttta |
3427917 |
T |
|
| Q |
303 |
gctagctatctatcttata-nnnnnnnngatcgtgaagatttaagacaatttcttagttcttttataatgaagtaatgaagatatttcttacacttaatg |
401 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3427918 |
gctagctatctatcttatatttttttttgatcgtgaagatttaagacaatttcttagttcttttataatgaagtaatgaagatatttcttacacttaatg |
3428017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 3 - 218
Target Start/End: Original strand, 3433809 - 3434024
Alignment:
| Q |
3 |
tggagaagcaaaggcaaaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtggt |
102 |
Q |
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||||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |
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| T |
3433809 |
tggagaagctagggcaaaagggttagcggtgaaagtaccacaaagtcctccaaggccaactagaacattcctcctatttcctacaacaatgttttgtagt |
3433908 |
T |
|
| Q |
103 |
tcttgttcctctttagggttgtattggttactattattaccactcaatctgatcacttggcgtcttggtaattttctatgtctagaatatttttgttgtt |
202 |
Q |
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| || ||| ||||||||||||| |||||||| |||||||||||||||| ||||||||||||||||||||||| |||||||| ||||| |||| ||||||| |
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| T |
3433909 |
tgttcttcttctttagggttgttttggttaccattattaccactcaatgtgatcacttggcgtcttggtaatattctatgtttagaagatttctgttgtt |
3434008 |
T |
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| Q |
203 |
tttgtgaaaatggata |
218 |
Q |
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|||||||||||||||| |
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| T |
3434009 |
tttgtgaaaatggata |
3434024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 168; Significance: 6e-90; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 11896664 - 11896449
Alignment:
| Q |
3 |
tggagaagcaaaggcaaaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtggt |
102 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
11896664 |
tggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacatttctcctatttcctacaacaatgttttgtagt |
11896565 |
T |
|
| Q |
103 |
tcttgttcctctttagggttgtattggttactattattaccactcaatctgatcacttggcgtcttggtaattttctatgtctagaatatttttgttgtt |
202 |
Q |
| |
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|||||||| ||||||||||||| |||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
11896564 |
tcttgttcttctttagggttgttttggttactaatattaccactgaatgtgatcacttggcgtcttggtaattttctatgtttagaagatttttgttgtt |
11896465 |
T |
|
| Q |
203 |
tttgtgaaaatggata |
218 |
Q |
| |
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||||||||||| |||| |
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| T |
11896464 |
tttgtgaaaattgata |
11896449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 3 - 218
Target Start/End: Complemental strand, 11911964 - 11911749
Alignment:
| Q |
3 |
tggagaagcaaaggcaaaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacattcctcctatttcctacaacaatgttttgtggt |
102 |
Q |
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||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
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| T |
11911964 |
tggagaagctagggcaaaagggttagtggtgaaagtaccacaaagtcctccaaggccaattagaacatttctcctatttcctacaacaatgttttgtagt |
11911865 |
T |
|
| Q |
103 |
tcttgttcctctttagggttgtattggttactattattaccactcaatctgatcacttggcgtcttggtaattttctatgtctagaatatttttgttgtt |
202 |
Q |
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|||||||| ||||||||||||| |||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |||||||||||| |
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| T |
11911864 |
tcttgttcttctttagggttgttttggttactaatattaccactgaatgtgatcacttggcgtcttggtaattttctatgtttagaagatttttgttgtt |
11911765 |
T |
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| Q |
203 |
tttgtgaaaatggata |
218 |
Q |
| |
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||||||||||| |||| |
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| T |
11911764 |
tttgtgaaaattgata |
11911749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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