View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12582_low_4 (Length: 392)
Name: NF12582_low_4
Description: NF12582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12582_low_4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 11 - 392
Target Start/End: Complemental strand, 7095838 - 7095457
Alignment:
| Q |
11 |
cagagagaatcgaatctgagatcttaaaagaaacatactctaaaggctcaaacatcaccagaccaacccaaatcataaagtacaatcacttaatacatgt |
110 |
Q |
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| T |
7095838 |
cagagagaatcgaatctgagatcttaaaagaaacacactctaaaggctcaaacatcaccagatcaacccaagtcataaagcacaatcacttaatacatgt |
7095739 |
T |
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| Q |
111 |
cctcggaaaaaagaagtcattagccaactagaaatctcttatcaaagacaaactaactaaaaatcatcataaggaccaggtcctctataaaattattttc |
210 |
Q |
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| T |
7095738 |
cctcggaaaaaagaagacattagccaactagaaatctcttgtcaaagaaaaactaactaaaaatcatcataaggaccaggtcctctataaaattattttc |
7095639 |
T |
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| Q |
211 |
tccaatcacatccttaaaaaagatgagggattcaagttccctttcaagccacacacatattcttaaaattggttgatgaaaagaagtgtccctaactgaa |
310 |
Q |
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| T |
7095638 |
tccaatcacatccttaaaaaagatgagggattcaagttccctttcaagccacacacatattcttaaaattggttgatgaaaagaagtgtccctaactgaa |
7095539 |
T |
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| Q |
311 |
tatcatgcaactaagggggtgttgtatggaaatgtggggacaaagaaacaaaaaacacagagaagaaggattgattagtgac |
392 |
Q |
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| T |
7095538 |
tatcatgcagctaagggggtgttgtatggaaatgtggggacaaagaaacaaaaaacacagagaagaaggattgattagtgac |
7095457 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 13 - 45
Target Start/End: Original strand, 27198680 - 27198712
Alignment:
| Q |
13 |
gagagaatcgaatctgagatcttaaaagaaaca |
45 |
Q |
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| T |
27198680 |
gagagaatcgaatatgagatcttaaaagaaaca |
27198712 |
T |
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