View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12582_low_5 (Length: 388)
Name: NF12582_low_5
Description: NF12582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12582_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 19 - 353
Target Start/End: Complemental strand, 43069579 - 43069243
Alignment:
| Q |
19 |
ccttttccttctacctaacaaac----tactactaacatttccacctttatccaaacagttacactagaaatcctatcaccatgtggaaaacataagagt |
114 |
Q |
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| T |
43069579 |
ccttttccttctacctaacaaacaaactactactaacatttccacctttatccaaacagttacactggaaaccctatcaccatatggaaaacataagagt |
43069480 |
T |
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| Q |
115 |
gaggagacactcatcgtgatcaatcatctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaaaattt |
214 |
Q |
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| T |
43069479 |
gaggagacactcat---gatcaatcatctacgtgtagaataagtaatataataattaagaagatttcatttcatcaaaaaatatgagcgattcaaaattt |
43069383 |
T |
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| Q |
215 |
tcctcaata-ttttgtgcatgaaatgaaacaaaaagctcttacaagattgaatttcaaaagnnnnnnngtacggcaaaggaagatctagaccctccaagg |
313 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
43069382 |
tcctcaatatttttgtgcatgaaatgaaacaaaaagctcttacaagattgaatttcaaaagtttttttgtacggcaaaggaagatctagaccctccaagg |
43069283 |
T |
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| Q |
314 |
aaactccctcttctagttattatacaagctcctcttgaag |
353 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
43069282 |
aaactccctcttctagttattatacaagctcctcttgaag |
43069243 |
T |
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