View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12582_low_6 (Length: 385)
Name: NF12582_low_6
Description: NF12582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12582_low_6 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 16 - 377
Target Start/End: Original strand, 45682792 - 45683153
Alignment:
| Q |
16 |
gtaataatcccatcatgaatgaatctggggaagggttgcacccattatggatctatgttaggtttcctttacatctagaaaaagctaattccactactca |
115 |
Q |
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| T |
45682792 |
gtaataatcccatcatgaatgaatctggggaagggttgcacccattatggatctatgttaggtttcctttacatctagaaaaagctaattccactactca |
45682891 |
T |
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| Q |
116 |
aacctttagatgaattaaatttgacttaagtttgaactcccagtattttgtatattttatataatatatcgtaataagttaaaccgaggaatctgttcct |
215 |
Q |
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| T |
45682892 |
aacctttagatgaattaaatttgacttaagtttgaactcccagtattttgtatattttatataatatatcgtaataagttaaaccaaggaatctgttcct |
45682991 |
T |
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| Q |
216 |
tttggatgaactgagaagcaattgtagtattatgaaccttcgtttgttttatcattacaggggacgtgtgagatgggatgaagttaatattgaaaacatt |
315 |
Q |
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| T |
45682992 |
tttggatgaactgagaagcaattgtagtattatgaaccttcgtttgttttatcattacaggggacgtgtgagatgggatgaagttaatattgaaaacatt |
45683091 |
T |
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| Q |
316 |
gaagcaaacaagcctgtgaggcaaaaaattaccgagcctaagactccttaccatcctatgct |
377 |
Q |
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| T |
45683092 |
gaagcaaacaagcctgtgaggcaaaaaattaccgagcctaagactccttaccatcctatgct |
45683153 |
T |
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Back To:
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Target: scaffold0022 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 375
Target Start/End: Complemental strand, 97444 - 97343
Alignment:
| Q |
274 |
aggggacgtgtgagatgggatgaagttaatattgaaaacattgaagcaaacaagcctgtgaggcaaaaaattaccgagcctaagactccttaccatccta |
373 |
Q |
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| T |
97444 |
aggggacgtgtaaggtgggatgaggctaacattggagaaattgaggcaaacaaacctgtgaggcagaaaattactgagcctaagactccatatcatccta |
97345 |
T |
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| Q |
374 |
tg |
375 |
Q |
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|| |
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| T |
97344 |
tg |
97343 |
T |
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