View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12582_low_8 (Length: 292)
Name: NF12582_low_8
Description: NF12582
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12582_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 18 - 278
Target Start/End: Complemental strand, 26031451 - 26031192
Alignment:
| Q |
18 |
taatagtgatggaaaaatgtaattttcaaaactagaaagtagaaactcgcattttcaattcttcaacactctcgttagtaccctatctgccttcttgaca |
117 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |
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| T |
26031451 |
taatagtgactgaaaaatgtaattttcaaaactagaaagtagaaactcgcattttcaattcttcaacactctcgttagtaacctatctgccttcttaaca |
26031352 |
T |
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| Q |
118 |
tgacatcctgcttcacttcctcaaccttccaacccatcccctattgtttagtgggagaaaccaccagtgttgttttgttgagtatgagatggcaactgct |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26031351 |
tgacatcctgcttcacttcctcaaccttccaacccatcccctattgtttagtgggagaaaccaccagtgttgttttgttgagtatgagatggcaactgct |
26031252 |
T |
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| Q |
218 |
tcacttcctcaaccctccaaccttgagtgtgagtaacgagcttgctgactcatgttgtttg |
278 |
Q |
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|||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |
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| T |
26031251 |
tcacttcctcaaccctccaacccggagt-tgagtaacgagcttgctgactcatgttgtttg |
26031192 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 55 - 278
Target Start/End: Complemental strand, 26036233 - 26036019
Alignment:
| Q |
55 |
agtagaaactcgcattttcaattcttcaacactctcgttagtaccctatctgccttcttgacatgacatcctgcttcacttcctcaaccttccaacccat |
154 |
Q |
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| T |
26036233 |
agtagaaactcacattttcaatttttcaacactctcgttagtaccttatctgccttcttaacatggcatcctgcttcatttcctcaaccttccaacccat |
26036134 |
T |
|
| Q |
155 |
cccctattgtttagtgggagaaaccaccagtgttgttttgttgagtatgagatggcaactgcttcacttcctcaaccctccaaccttgagtgtgagtaac |
254 |
Q |
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||| || |||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| |||||||||| ||||||||||||| |
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| T |
26036133 |
ccctta--------tgggagaaaccaccagtgttgttttgttgagtgtgagatggtaattgcttcacttcctcaaacctccaacctagagtgtgagtaac |
26036042 |
T |
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| Q |
255 |
gagcttgctgactcatgttgtttg |
278 |
Q |
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|| |||| || ||||||||||||| |
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| T |
26036041 |
gaccttgatg-ctcatgttgtttg |
26036019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 38441197 - 38441407
Alignment:
| Q |
30 |
aaaaatgtaattttcaaaactagaaagtagaaactcgcattttcaattc-ttcaacactctcgttagtaccctatctgccttcttgacatgacatcctgc |
128 |
Q |
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|||||||||||||||| ||||||||| ||||||||| ||||||||||| || |||||| || |||||||| ||||| |||||| |||||||||| ||| |
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| T |
38441197 |
aaaaatgtaattttcataactagaaaatagaaactctcattttcaatttattgaacactttctttagtaccatatctttcttcttaacatgacatcttgc |
38441296 |
T |
|
| Q |
129 |
ttcacttcctcaaccttccaacccatcccctattgtttagtgggagaaaccaccagtgttgttttgttgagtatgagatggcaactgcttcacttcctca |
228 |
Q |
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|| ||| |||||||||||||||||||||| | ||| ||||||||||||||||||||||||||||| |||| ||||||| |||||||||| |||||||| |
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| T |
38441297 |
tttactacctcaaccttccaacccatcccttgccgttgagtgggagaaaccaccagtgttgttttgtcgagtgtgagatgacaactgcttcgcttcctca |
38441396 |
T |
|
| Q |
229 |
accctccaacc |
239 |
Q |
| |
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|| |||||||| |
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| T |
38441397 |
actctccaacc |
38441407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 121 - 239
Target Start/End: Original strand, 38450091 - 38450209
Alignment:
| Q |
121 |
catcctgcttcacttcctcaaccttccaacccatcccctattgtttagtgggagaaaccaccagtgttgttttgttgagtatgagatggcaactgcttca |
220 |
Q |
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||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
38450091 |
catcctgcttcacttcctcaaccctccaacccatcccctatcgttgagtgggagaaaccaccagtgttgctttgttgagtgtgagatggcaactgcttca |
38450190 |
T |
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| Q |
221 |
cttcctcaaccctccaacc |
239 |
Q |
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|||||||||| |||||||| |
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| T |
38450191 |
cttcctcaactctccaacc |
38450209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 38449600 - 38449689
Alignment:
| Q |
30 |
aaaaatgtaattttcaaaactagaaagtagaaactcgcattttcaattc-ttcaacactctcgttagtaccctatctgccttcttgacatg |
119 |
Q |
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|||||||||||||||| | |||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||| ||||| |
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| T |
38449600 |
aaaaatgtaattttcatagttagaaagtagaaactctcattttcaattcattcaacactct-tatagtaccctatctgccttcttaacatg |
38449689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 62
Target Start/End: Complemental strand, 26036590 - 26036530
Alignment:
| Q |
1 |
aaattttcaagcccctctaatagtgatggaaaaatgtaattttcaaaactagaaagtagaaa |
62 |
Q |
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||||||| | ||| |||||||||||| |||||| ||||||||||||||||| |||||||||| |
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| T |
26036590 |
aaattttgaggccactctaatagtgacggaaaa-tgtaattttcaaaactaaaaagtagaaa |
26036530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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