View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12583_high_7 (Length: 257)
Name: NF12583_high_7
Description: NF12583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12583_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 18 - 252
Target Start/End: Complemental strand, 45586758 - 45586524
Alignment:
| Q |
18 |
agtgggggcaaatgccaaacagtcgtagtcaccatatggcagtaaataatatgttggttcctttcctttcaagagtgacgataaaaac-ccattgtttgg |
116 |
Q |
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| T |
45586758 |
agtgggggcaaatgccaaacagtcgtagtcaccatatggcagtaaataatatgttggttcctttcctttcaagagtgacgacaaaaactccattgtttgg |
45586659 |
T |
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| Q |
117 |
catcatgtggtcattccatgcatatatgtcatttttggtgtggtgaaatttcacgtgagggcatcattcaagttccttaatagtattgttgtttgaactt |
216 |
Q |
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|||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45586658 |
catcatatggtcattccatgcatatatgtcatttt-ggtgtggtgaaatttcacgtgagggcatcattcaagttccttaatagtattgttgtttgaactt |
45586560 |
T |
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| Q |
217 |
caactggattttcctgaattatactcctttgcttct |
252 |
Q |
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||||||||||||||||||||||||||| ||| |||| |
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| T |
45586559 |
caactggattttcctgaattatactccattgtttct |
45586524 |
T |
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