View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12583_low_1 (Length: 1145)

Name: NF12583_low_1
Description: NF12583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12583_low_1
NF12583_low_1
[»] chr5 (10 HSPs)
chr5 (19-880)||(2016491-2017346)
chr5 (879-1131)||(2017973-2018225)
chr5 (664-790)||(25655684-25655809)
chr5 (887-959)||(32389626-32389698)
chr5 (276-385)||(2015061-2015174)
chr5 (808-872)||(25655821-25655885)
chr5 (904-959)||(18175227-18175282)
chr5 (884-959)||(39147730-39147805)
chr5 (885-946)||(18147719-18147780)
chr5 (895-944)||(28758425-28758474)
[»] chr7 (17 HSPs)
chr7 (884-959)||(30806118-30806193)
chr7 (884-959)||(3392470-3392545)
chr7 (884-959)||(10244881-10244956)
chr7 (884-951)||(41854000-41854067)
chr7 (890-959)||(12935749-12935818)
chr7 (884-924)||(30872025-30872065)
chr7 (879-951)||(32984217-32984289)
chr7 (884-951)||(12640589-12640656)
chr7 (884-951)||(15106691-15106758)
chr7 (884-959)||(45284811-45284886)
chr7 (882-928)||(4611240-4611286)
chr7 (884-926)||(8227349-8227391)
chr7 (884-926)||(21597680-21597722)
chr7 (873-923)||(31170226-31170276)
chr7 (894-928)||(40518912-40518946)
chr7 (879-924)||(29461842-29461887)
chr7 (886-919)||(45329141-45329174)
[»] chr2 (13 HSPs)
chr2 (879-962)||(30392821-30392904)
chr2 (882-956)||(23919472-23919546)
chr2 (884-951)||(14663987-14664054)
chr2 (884-951)||(15233416-15233483)
chr2 (884-923)||(15625345-15625384)
chr2 (884-959)||(23405199-23405274)
chr2 (884-947)||(28202297-28202360)
chr2 (883-924)||(6141219-6141260)
chr2 (890-947)||(9375104-9375161)
chr2 (883-924)||(12413492-12413533)
chr2 (883-924)||(12425552-12425593)
chr2 (883-924)||(29734690-29734731)
chr2 (894-947)||(33424323-33424376)
[»] chr1 (14 HSPs)
chr1 (879-957)||(31401239-31401317)
chr1 (894-946)||(4865827-4865879)
chr1 (884-946)||(10292936-10292998)
chr1 (894-959)||(11333677-11333742)
chr1 (894-959)||(11491698-11491763)
chr1 (879-951)||(15775737-15775809)
chr1 (904-959)||(3229706-3229761)
chr1 (884-951)||(6702579-6702646)
chr1 (884-951)||(14519323-14519390)
chr1 (884-959)||(36666568-36666643)
chr1 (884-926)||(41573288-41573330)
chr1 (895-928)||(17517027-17517060)
chr1 (150-211)||(48050972-48051033)
chr1 (889-930)||(48145125-48145166)
[»] chr4 (18 HSPs)
chr4 (894-959)||(49056788-49056853)
chr4 (879-951)||(9661548-9661620)
chr4 (883-943)||(21442637-21442697)
chr4 (884-959)||(27091464-27091539)
chr4 (881-951)||(46582634-46582704)
chr4 (883-928)||(35851724-35851769)
chr4 (884-959)||(37310030-37310105)
chr4 (884-959)||(40051625-40051700)
chr4 (884-947)||(50376653-50376716)
chr4 (884-951)||(53572327-53572394)
chr4 (894-951)||(1458018-1458075)
chr4 (894-959)||(22433363-22433428)
chr4 (894-959)||(30057235-30057300)
chr4 (894-959)||(32339337-32339402)
chr4 (665-735)||(35752640-35752706)
chr4 (895-959)||(38433322-38433386)
chr4 (894-959)||(41137912-41137977)
chr4 (884-957)||(52699192-52699265)
[»] chr8 (7 HSPs)
chr8 (879-939)||(20872470-20872530)
chr8 (885-959)||(12770372-12770446)
chr8 (881-946)||(23435238-23435303)
chr8 (889-953)||(12510433-12510497)
chr8 (884-951)||(42880951-42881018)
chr8 (885-959)||(11231424-11231498)
chr8 (883-924)||(24696027-24696068)
[»] chr6 (11 HSPs)
chr6 (884-959)||(2488878-2488953)
chr6 (879-923)||(28957104-28957148)
chr6 (887-939)||(30527768-30527820)
chr6 (887-926)||(10999153-10999192)
chr6 (883-946)||(24623316-24623379)
chr6 (884-951)||(30938391-30938458)
chr6 (883-926)||(33608336-33608379)
chr6 (884-926)||(16453356-16453398)
chr6 (883-924)||(2692214-2692255)
chr6 (881-926)||(14945532-14945577)
chr6 (894-951)||(27218897-27218954)
[»] chr3 (11 HSPs)
chr3 (884-959)||(52309102-52309177)
chr3 (884-926)||(31085008-31085050)
chr3 (881-959)||(53432729-53432807)
chr3 (150-273)||(30443733-30443858)
chr3 (884-924)||(12976623-12976663)
chr3 (884-959)||(4227736-4227811)
chr3 (884-926)||(7827508-7827550)
chr3 (884-926)||(7829896-7829938)
chr3 (894-928)||(35718579-35718613)
chr3 (885-959)||(49443415-49443489)
chr3 (881-930)||(48251572-48251621)
[»] scaffold0330 (1 HSPs)
scaffold0330 (894-959)||(6781-6846)
[»] scaffold0445 (1 HSPs)
scaffold0445 (884-951)||(4014-4081)
[»] scaffold0519 (1 HSPs)
scaffold0519 (885-959)||(2954-3028)
[»] scaffold0012 (1 HSPs)
scaffold0012 (885-951)||(122550-122616)
[»] scaffold0031 (1 HSPs)
scaffold0031 (879-928)||(50024-50073)


Alignment Details
Target: chr5 (Bit Score: 762; Significance: 0; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 762; E-Value: 0
Query Start/End: Original strand, 19 - 880
Target Start/End: Original strand, 2016491 - 2017346
Alignment:
Q  19 cttactttgttgatcattttgttattcaattaaccatgtgtcatgtgcggttttttgttattctgcaagtgaaatcattttgtatgcaaataccttttaa 118  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2016491 cttactttgttgatcattttgttattcaattaaccatgtggcatgtgcggttttttgttattctgcaagtgaaatcattttgtatgcaaataccttttaa 2016590  T
Q  119 ttaattaatcactagtttgagtttactattgtactccctatggacctttttagaagtgacaaatgagtcaataaaagttgatgtaattggttcttatata 218  Q
    |||||||||||||| |||||||||||||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  2016591 ttaattaatcactaatttgagtttactattgtactccctctggacttttttataagtgacaaatgagtcgataaaagttgatgtaattggttcttatata 2016690  T
Q  219 gaccaaatacatcaattttattgatctattcgtctcttataaaaatgaccggaggaggtattgtctgcattcttcattccttgtctgcgctttgtagtct 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2016691 gaccaaatacatcaattttattgatctattcgtctcttataaaaatgactggaggaggtattgtctgcattcttcattccttgtctgcgctttgtagtct 2016790  T
Q  319 tggtcatgttgtggcaattgagaaagtaagcatcattcaacacatctttggttcaatgcatgcaatgcaactaagtcggattttgaattctaatttgcta 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  2016791 tggtcatgttgtggcaattgagaaagtaagcatcattcaacacatctttggttcaatgcatacaatgcaactaagtcggattttgaattctaatttgcta 2016890  T
Q  419 catttcggatatgttaatgacttggtgtaaggtttaaggcttcgccatgttgtttgcattctatttcaaatatctcatttgttggtgcaaattaactgca 518  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  2016891 catttcggatatgttaatgacttggtgtaaggtttaaggcttcgccatgttgtttgcattctgtttcaaatatctcatttgttggtgcaaattaactgca 2016990  T
Q  519 atgttaacttgtctgtcttctactcacattgataaattcctcagagccaaatttttacacagaatggttatatgccaatattgataaacttacaacatca 618  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  2016991 atgttaacttgtctgtcttctactcacattgataaattcctcagagccaaatttttacacagaatggttatataccaatattgataaacttacaacatca 2017090  T
Q  619 ttaacagcaaaagaataagctggattgatagatgatgacgataattttgttttgtagatgtaattttgttggaaaggtttgatattcgatttttaagtgg 718  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2017091 ttaacagcaaaagaataagctggattgatagatgatgacgataa-tttgttttgtagatgtaattttgttggaaaggtttgatattcgatttttaagtgg 2017189  T
Q  719 attggaacaggagtgattttactcgggcatgtggtttctctactagactatttctcattatcctctttgaattnnnnnnnnnnnnnccagaaaggattaa 818  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||             ||||||||||||||    
T  2017190 attggaacatgagtgattttactcgggcatgtggtttctctactagactatttctcatcatcctctttgaatt-----aaaaaaacccagaaaggattaa 2017284  T
Q  819 ttctaagttggcacacaaaattttggaagatttgagaagctaggaatgtgataagctggttt 880  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2017285 ttctaagttggcacacaaaattttggaagatttgagaagctaggaatgtgataagctggttt 2017346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 879 - 1131
Target Start/End: Original strand, 2017973 - 2018225
Alignment:
Q  879 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccacttgtta-tttaagtctccctg 977  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||||||||| ||    
T  2017973 ttcctgtgagtttatctcagttgatagggacattgtataatatatgtagaagacggagttctaaccc-agacatcccacttgttactttaagtctccttg 2018071  T
Q  978 acccaataaaaaatataaaatactctcctacgatttatgtttgaactaagaaattgaactaaaaaatctcacttcttatcccataattcataccaattaa 1077  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2018072 acccaataaaaaatataaaatactctcctacgatttatgtttgaactaagaaattgaactaaaaaatctcacttcttatcccataattcataccaattaa 2018171  T
Q  1078 gttctataaccctccacaaacaccatgggctattaagaaagaaaagatgatgtc 1131  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2018172 gttctataaccttccacaaacaccatgggctattaagaaagaaaagatgatgtc 2018225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 664 - 790
Target Start/End: Original strand, 25655684 - 25655809
Alignment:
Q  664 tttgttttgtagatgtaattttgttggaaaggtttgatattcgatttttaagtggattggaacaggagtgattttactcgggcatgtggtttctctacta 763  Q
    ||||||||||| | ||| ||||||  |||||||||  ||||| ||||| |||||||||||||   ||| ||||||| || || || |||| ||||| |||    
T  25655684 tttgttttgtaaaagtagttttgtcagaaaggtttagtattcaattttcaagtggattggaatgagagcgatttta-tctgggatatggtctctcttcta 25655782  T
Q  764 gactatttctcattatcctctttgaat 790  Q
    |||||||| |||| |||||||||||||    
T  25655783 gactatttttcatcatcctctttgaat 25655809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 887 - 959
Target Start/End: Complemental strand, 32389698 - 32389626
Alignment:
Q  887 agtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||| |||||||| ||| || |||||||| |||||||||||| |||||||||||  ||||||| |||||||    
T  32389698 agtttagctcagttggtagagatattgcatattatatgtaggagtcggagttcaaattccagacaccccactt 32389626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 385
Target Start/End: Original strand, 2015061 - 2015174
Alignment:
Q  276 gtattgtctgcattctt-cattccttgtctgcgctttgtagtcttggtcat---gttgtggcaattgagaaagtaagcatcattcaacacatctttggtt 371  Q
    |||||||||||||| || ||| |||||||| | ||| |||||||||||| |   ||| ||||||| ||||||||||| ||||||||   | |||||||||    
T  2015061 gtattgtctgcattttttcataccttgtctacacttagtagtcttggtcctcgtgttttggcaatcgagaaagtaagaatcattcagggcttctttggtt 2015160  T
Q  372 caatgcatgcaatg 385  Q
    ||||||||| ||||    
T  2015161 caatgcatgtaatg 2015174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 808 - 872
Target Start/End: Original strand, 25655821 - 25655885
Alignment:
Q  808 gaaaggattaattctaagttggcacacaaaattttggaagatttgagaagctaggaatgtgataa 872  Q
    |||| ||||||||||||  |||||||||| | |||||||||||||||||| ||| |||| |||||    
T  25655821 gaaatgattaattctaatctggcacacaacaatttggaagatttgagaagttagaaatgagataa 25655885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 904 - 959
Target Start/End: Original strand, 18175227 - 18175282
Alignment:
Q  904 agggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||| ||||||| |||||||||| | ||| |||| |||||||||||||||||||    
T  18175227 agggacgttgcatattatatgtaggggtcggggttcgaaccccagacatcccactt 18175282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 959
Target Start/End: Original strand, 39147730 - 39147805
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||||||||||||||| |||| | | |||||| ||||||| ||||  ||||||| ||||||| ||| |||||||    
T  39147730 gtgagtttatctcagttggtaggaatactgcatattatatgttggagctggagttcgaaccccaaacaccccactt 39147805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 885 - 946
Target Start/End: Original strand, 18147719 - 18147780
Alignment:
Q  885 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 946  Q
    |||||||| ||||||||||| ||||| ||||||||||||| ||||  ||| |||||| ||||    
T  18147719 tgagtttagctcagttgataaggacaatgcataatatatgcaggatccggggttcaaccccc 18147780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 944
Target Start/End: Complemental strand, 28758474 - 28758425
Alignment:
Q  895 tcagttgatagggacattgcataatatatgtaggagacggagttcaaacc 944  Q
    ||||||| ||||||||||||||||| |||| ||||| ||| |||||||||    
T  28758474 tcagttggtagggacattgcataatttatgcaggagtcggggttcaaacc 28758425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 884 - 959
Target Start/End: Original strand, 30806118 - 30806193
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||||||| |||||||| |||||| |||||||| |||||| ||| | |||||||| |||||| ||||||||||||    
T  30806118 gtgagtttagctcagttggtagggatattgcatattatatgcaggggtcggagttcgaaccccggacatcccactt 30806193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 884 - 959
Target Start/End: Original strand, 3392470 - 3392545
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||| ||| ||||||||||| ||| |||||||| |||||||||| | ||| |||| ||||||||||| |||||||    
T  3392470 gtgagcttaactcagttgatatggatattgcatattatatgtaggggtcggggttcgaaccccagacaccccactt 3392545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 884 - 959
Target Start/End: Complemental strand, 10244956 - 10244881
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||| ||| |||||||| |||||| |||||||| |||||||||||| ||| |||| |||||| |||| |||||||    
T  10244956 gtgagcttagctcagttggtagggatattgcatattatatgtaggagccggggttcgaaccccggacaccccactt 10244881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 884 - 951
Target Start/End: Original strand, 41854000 - 41854067
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    ||||| ||| ||||||||  |||||||||||||||| |||| ||| ||||||||||||||||| ||||    
T  41854000 gtgagcttagctcagttggcagggacattgcataatttatgcaggggacggagttcaaaccccggaca 41854067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 890 - 959
Target Start/End: Original strand, 12935749 - 12935818
Alignment:
Q  890 ttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||||||||||  |||||||||||||||| |||||||| || || |||| ||||||||||  |||||||    
T  12935749 ttatctcagttggcagggacattgcataatttatgtaggggatggggttcgaaccccagacgccccactt 12935818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 884 - 924
Target Start/End: Original strand, 30872025 - 30872065
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatg 924  Q
    |||||||||||||||||| || |||||||||||||||||||    
T  30872025 gtgagtttatctcagttggtatggacattgcataatatatg 30872065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 879 - 951
Target Start/End: Complemental strand, 32984289 - 32984217
Alignment:
Q  879 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    |||||||||| ||| |||||||| |||||| |||||||| |||||  ||||| ||| ||||||||||| ||||    
T  32984289 ttcctgtgagcttagctcagttggtagggatattgcatattatatacaggagtcggggttcaaaccccggaca 32984217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 951
Target Start/End: Complemental strand, 12640656 - 12640589
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| |||||||||||    
T  12640656 gtgagcttagctcagttggtagggatattgcatattatatgcaggagccggggttcgaaccccagaca 12640589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 951
Target Start/End: Complemental strand, 15106758 - 15106691
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| |||||||||||    
T  15106758 gtgagcttaactcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccagaca 15106691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 959
Target Start/End: Complemental strand, 45284886 - 45284811
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||| ||| |||||||||||||||||||| ||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  45284886 gtgagcttagctcagttgatagggacattgaataatttatgcaggggtcggggttcgaaccccggacaccccactt 45284811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 882 - 928
Target Start/End: Original strand, 4611240 - 4611286
Alignment:
Q  882 ctgtgagtttatctcagttgatagggacattgcataatatatgtagg 928  Q
    ||||||| ||| |||||||| ||||||||||||||||| ||||||||    
T  4611240 ctgtgagcttagctcagttggtagggacattgcataatttatgtagg 4611286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 926
Target Start/End: Original strand, 8227349 - 8227391
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgta 926  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||    
T  8227349 gtgagtttagctcagttgataaggacaatgcataatatatgta 8227391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 926
Target Start/End: Original strand, 21597680 - 21597722
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgta 926  Q
    ||||| ||||||||||||||| ||||| |||||||||||||||    
T  21597680 gtgagcttatctcagttgatatggacaatgcataatatatgta 21597722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 873 - 923
Target Start/End: Complemental strand, 31170276 - 31170226
Alignment:
Q  873 gctggtttcctgtgagtttatctcagttgatagggacattgcataatatat 923  Q
    |||||| | ||||||||||| |||||||||||| || ||||||||||||||    
T  31170276 gctggtattctgtgagtttagctcagttgatagagatattgcataatatat 31170226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 894 - 928
Target Start/End: Complemental strand, 40518946 - 40518912
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtagg 928  Q
    |||||||| ||||||||||||||||||||||||||    
T  40518946 ctcagttggtagggacattgcataatatatgtagg 40518912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 924
Target Start/End: Complemental strand, 29461887 - 29461842
Alignment:
Q  879 ttcctgtgagtttatctcagttgatagggacattgcataatatatg 924  Q
    |||| ||||||||| |||||||| |||||||| |||||||||||||    
T  29461887 ttcccgtgagtttaactcagttggtagggacaatgcataatatatg 29461842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 886 - 919
Target Start/End: Original strand, 45329141 - 45329174
Alignment:
Q  886 gagtttatctcagttgatagggacattgcataat 919  Q
    |||||||||||||||| |||||||||||||||||    
T  45329141 gagtttatctcagttggtagggacattgcataat 45329174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 879 - 962
Target Start/End: Complemental strand, 30392904 - 30392821
Alignment:
Q  879 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccacttgtt 962  Q
    ||||| |||| ||| |||||||| |||||| |||||||| |||||||||||| ||| |||| |||||||||||  |||||||||    
T  30392904 ttcctttgagcttagctcagttggtagggatattgcatattatatgtaggagtcggggttcgaaccccagacactccacttgtt 30392821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 882 - 956
Target Start/End: Complemental strand, 23919546 - 23919472
Alignment:
Q  882 ctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatccca 956  Q
    ||||||| ||| |||||||| |||||||||||||||||||||| ||| | ||| |||| || |||||||| ||||    
T  23919546 ctgtgagcttagctcagttggtagggacattgcataatatatggaggggtcggggttcgaatcccagacacccca 23919472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 951
Target Start/End: Original strand, 14663987 - 14664054
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    |||||||||  ||||||| ||||||||||||||||| |||| ||| | | ||||||||||||| ||||    
T  14663987 gtgagtttagttcagttggtagggacattgcataatttatgcaggggccagagttcaaaccccggaca 14664054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 951
Target Start/End: Original strand, 15233416 - 15233483
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    ||||| ||| |||| ||| |||||| |||||||| |||||| ||| | ||||||||||||||||||||    
T  15233416 gtgagcttagctcaattggtagggatattgcatattatatgcaggggccggagttcaaaccccagaca 15233483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 923
Target Start/End: Complemental strand, 15625384 - 15625345
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatat 923  Q
    ||||||||| |||| |||||||||||||||||||||||||    
T  15625384 gtgagtttagctcaattgatagggacattgcataatatat 15625345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 959
Target Start/End: Original strand, 23405199 - 23405274
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||| ||| |||||||| |||||||||||||||||||||| ||| | ||| |||| |||||  |||| |||||||    
T  23405199 gtgagcttagctcagttggtagggacattgcataatatatgcaggggtcggggttcgaaccctggacaccccactt 23405274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 947
Target Start/End: Original strand, 28202297 - 28202360
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccca 947  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| |   || |||||||||||||    
T  28202297 gtgagcttagctcagttgatagggacaatgcataatatatgtaaggtccgaagttcaaacccca 28202360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 924
Target Start/End: Original strand, 6141219 - 6141260
Alignment:
Q  883 tgtgagtttatctcagttgatagggacattgcataatatatg 924  Q
    ||||||||||||||||||| || ||||| |||||||||||||    
T  6141219 tgtgagtttatctcagttggtaaggacaatgcataatatatg 6141260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 890 - 947
Target Start/End: Complemental strand, 9375161 - 9375104
Alignment:
Q  890 ttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccca 947  Q
    ||||||||||||  ||| ||||||||||||||||||||| | ||| |||| |||||||    
T  9375161 ttatctcagttggcaggaacattgcataatatatgtaggggtcggggttcgaacccca 9375104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 924
Target Start/End: Original strand, 12413492 - 12413533
Alignment:
Q  883 tgtgagtttatctcagttgatagggacattgcataatatatg 924  Q
    |||||||||||||| ||||||| ||||| |||||||||||||    
T  12413492 tgtgagtttatctcggttgataaggacaatgcataatatatg 12413533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 924
Target Start/End: Original strand, 12425552 - 12425593
Alignment:
Q  883 tgtgagtttatctcagttgatagggacattgcataatatatg 924  Q
    |||||||||||||| ||||||| ||||| |||||||||||||    
T  12425552 tgtgagtttatctcggttgataaggacaatgcataatatatg 12425593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 924
Target Start/End: Original strand, 29734690 - 29734731
Alignment:
Q  883 tgtgagtttatctcagttgatagggacattgcataatatatg 924  Q
    |||||||||| ||||||||||| ||||| |||||||||||||    
T  29734690 tgtgagtttagctcagttgatatggacaatgcataatatatg 29734731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 894 - 947
Target Start/End: Complemental strand, 33424376 - 33424323
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccca 947  Q
    |||| |||||||||||| ||||||||||||| | ||  ||||||||||||||||    
T  33424376 ctcaattgatagggacagtgcataatatatgcaagattcggagttcaaacccca 33424323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.000000000002; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 879 - 957
Target Start/End: Complemental strand, 31401317 - 31401239
Alignment:
Q  879 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccac 957  Q
    |||| ||||| ||| |||||||||||||||||||||||||| |||| ||||| ||  ||||||||||| |||| |||||    
T  31401317 ttcccgtgagcttagctcagttgatagggacattgcataatttatgcaggagccgaggttcaaaccccggacaccccac 31401239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 894 - 946
Target Start/End: Complemental strand, 4865879 - 4865827
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 946  Q
    |||||||| |||||||||||||||||||||||||| | |||||||| ||||||    
T  4865879 ctcagttggtagggacattgcataatatatgtaggggtcggagttcgaacccc 4865827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 884 - 946
Target Start/End: Original strand, 10292936 - 10292998
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 946  Q
    ||||| ||| ||||||||||||||||| ||||||||||||||| | ||||| ||| |||||||    
T  10292936 gtgagcttaactcagttgatagggacaatgcataatatatgtaagggacggggtttaaacccc 10292998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 894 - 959
Target Start/End: Original strand, 11333677 - 11333742
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||||| ||||||||||||||||| |||| ||| | |||||||| |||||| |||| |||||||    
T  11333677 ctcagttggtagggacattgcataatttatgcaggggccggagttcgaaccccggacaccccactt 11333742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 894 - 959
Target Start/End: Original strand, 11491698 - 11491763
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||||| ||||||||||||||||| |||| ||| | |||||||| |||||| |||| |||||||    
T  11491698 ctcagttggtagggacattgcataatttatgcaggggccggagttcgaaccccggacaccccactt 11491763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 879 - 951
Target Start/End: Original strand, 15775737 - 15775809
Alignment:
Q  879 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    |||| ||||| ||| |||| ||| |||||| |||||||| |||||| ||||| |||||||| |||||||||||    
T  15775737 ttcccgtgagcttaactcaattggtagggatattgcatattatatgcaggagccggagttcgaaccccagaca 15775809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 904 - 959
Target Start/End: Complemental strand, 3229761 - 3229706
Alignment:
Q  904 agggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||| |||||||||||||||||| |  || ||||||||||| ||||||||||||    
T  3229761 agggacgttgcataatatatgtaggggttggggttcaaaccccggacatcccactt 3229706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 951
Target Start/End: Original strand, 6702579 - 6702646
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| |||||||||||    
T  6702579 gtgagcttagctcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccagaca 6702646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 951
Target Start/End: Original strand, 14519323 - 14519390
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    ||||||||||||||||||||||||| ||| |||| |||||  ||||| ||| |||| | |||||||||    
T  14519323 gtgagtttatctcagttgatagggatattccatattatattcaggagtcggggttcgagccccagaca 14519390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 959
Target Start/End: Complemental strand, 36666643 - 36666568
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||| ||| |||||||| ||||||||||||||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  36666643 gtgagcttagctcagttggtagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccactt 36666568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 926
Target Start/End: Complemental strand, 41573330 - 41573288
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgta 926  Q
    ||||||||| |||||||| |||||||| |||||||||||||||    
T  41573330 gtgagtttaactcagttggtagggacaatgcataatatatgta 41573288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 928
Target Start/End: Complemental strand, 17517060 - 17517027
Alignment:
Q  895 tcagttgatagggacattgcataatatatgtagg 928  Q
    |||||||||||||||||| |||||||||||||||    
T  17517060 tcagttgatagggacattacataatatatgtagg 17517027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 211
Target Start/End: Complemental strand, 48051033 - 48050972
Alignment:
Q  150 tactccctatggacctttttagaagtgacaaatgagtcaataaaagttgatgtaattggttc 211  Q
    |||||||||||| |||||||| ||| |||||||  |||||  |||||||||||| |||||||    
T  48051033 tactccctatggtcctttttataagagacaaattggtcaactaaagttgatgtatttggttc 48050972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 889 - 930
Target Start/End: Complemental strand, 48145166 - 48145125
Alignment:
Q  889 tttatctcagttgatagggacattgcataatatatgtaggag 930  Q
    ||||||||||||| ||||||||||| |||||||| |||||||    
T  48145166 tttatctcagttggtagggacattgtataatataggtaggag 48145125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000007; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 894 - 959
Target Start/End: Original strand, 49056788 - 49056853
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||||| ||||||||||||||| |||||| ||||| |||||||| |||||| |||| |||||||    
T  49056788 ctcagttggtagggacattgcatattatatgcaggagccggagttcgaaccccggacaccccactt 49056853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 879 - 951
Target Start/End: Original strand, 9661548 - 9661620
Alignment:
Q  879 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    |||| |||||||||||||||||| || ||| |||||||| |||||||| ||| |||||||| |||||| ||||    
T  9661548 ttcccgtgagtttatctcagttggtatggatattgcatattatatgtaagagtcggagttcgaaccccggaca 9661620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 883 - 943
Target Start/End: Complemental strand, 21442697 - 21442637
Alignment:
Q  883 tgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaac 943  Q
    |||||||||| ||||||||||||||||||||||||||| | | ||||| |||| |||||||    
T  21442697 tgtgagtttaactcagttgatagggacattgcataatagaggaaggagtcggaattcaaac 21442637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 884 - 959
Target Start/End: Complemental strand, 27091539 - 27091464
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||||||| |||||||| ||||||||||| ||||| | || ||| | |||||||| |||||| ||||||||||||    
T  27091539 gtgagtttagctcagttggtagggacattgtataatttctgcaggggtcggagttcgaaccccggacatcccactt 27091464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 881 - 951
Target Start/End: Original strand, 46582634 - 46582704
Alignment:
Q  881 cctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    |||||||||||| |||||||| |||||| |||||||| |||||| ||||| ||  |||| |||||||||||    
T  46582634 cctgtgagtttagctcagttggtagggatattgcatattatatgcaggagccgaggttcgaaccccagaca 46582704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 883 - 928
Target Start/End: Complemental strand, 35851769 - 35851724
Alignment:
Q  883 tgtgagtttatctcagttgatagggacattgcataatatatgtagg 928  Q
    |||||| ||| |||||||| ||||||||||||||||||||||||||    
T  35851769 tgtgagcttaactcagttggtagggacattgcataatatatgtagg 35851724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 959
Target Start/End: Original strand, 37310030 - 37310105
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||||||| |||||||| || ||| |||||||| |||||||||| |  || |||||||||||  |||||||||||    
T  37310030 gtgagtttaactcagttggtatggatattgcatattatatgtaggggttggggttcaaaccccgtacatcccactt 37310105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 959
Target Start/End: Original strand, 40051625 - 40051700
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||| ||| |||||||| |||||| |||||||| |||||||||| |  || |||| ||||||||||| |||||||    
T  40051625 gtgagcttagctcagttggtagggatattgcatattatatgtaggggtaggggttcgaaccccagacaccccactt 40051700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 947
Target Start/End: Complemental strand, 50376716 - 50376653
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccca 947  Q
    ||||||||| |||||||| ||| |||||||||||||||||| ||| || || |||| |||||||    
T  50376716 gtgagtttaactcagttggtagagacattgcataatatatgcaggggaaggggttcgaacccca 50376653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 951
Target Start/End: Complemental strand, 53572394 - 53572327
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    ||||| ||| ||||||||||||||| |||||||| |||||| ||||| |||  |||||||||| ||||    
T  53572394 gtgagcttaactcagttgatagggatattgcatattatatgcaggagccgggattcaaaccccggaca 53572327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 894 - 951
Target Start/End: Complemental strand, 1458075 - 1458018
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    ||||||||||||||| |||||||| |||||| ||||| ||| |||| |||||| ||||    
T  1458075 ctcagttgatagggatattgcatattatatgcaggagccggggttcgaaccccggaca 1458018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 894 - 959
Target Start/End: Complemental strand, 22433428 - 22433363
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||||||||||| ||||||||||||||||| ||| | | |||||| |||| || |||| ||||||    
T  22433428 ctcagttgataggaacattgcataatatatgaaggggtcagagttcgaacctcaaacattccactt 22433363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 894 - 959
Target Start/End: Original strand, 30057235 - 30057300
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||||| |||||| |||||||| |||||| ||| | ||| ||||||||||| |||| |||||||    
T  30057235 ctcagttggtagggatattgcatattatatgcaggggtcggggttcaaaccccggacaccccactt 30057300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 894 - 959
Target Start/End: Original strand, 32339337 - 32339402
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||||| |||||| |||||||| |||||| | | | ||| |||||||||||||||| |||||||    
T  32339337 ctcagttgttagggatattgcatattatatgcaagggtcggggttcaaaccccagacaccccactt 32339402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 665 - 735
Target Start/End: Complemental strand, 35752706 - 35752640
Alignment:
Q  665 ttgttttgtagatgtaattttgttggaaaggtttgatattcgatttttaagtggattggaacaggagtgat 735  Q
    |||||||||||||||    |||| |||||| |||||||||| |||||||||||||| |||||  |||||||    
T  35752706 ttgttttgtagatgt----ttgtcggaaagatttgatattcaatttttaagtggatcggaacgtgagtgat 35752640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 895 - 959
Target Start/End: Original strand, 38433322 - 38433386
Alignment:
Q  895 tcagttgatagggacattgcataat-atatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||||||||| ||| ||||| || ||||||||||| |||||||| ||||||||||| |||||||    
T  38433322 tcagttgatagg-acaatgcattattatatgtaggagtcggagttcgaaccccagacaccccactt 38433386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 894 - 959
Target Start/End: Complemental strand, 41137977 - 41137912
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||||| |||||||||||||||||||||| ||| |  || |||| |||| |||||| |||||||    
T  41137977 ctcagttggtagggacattgcataatatatgcaggggttggggttcgaaccacagacaccccactt 41137912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 884 - 957
Target Start/End: Original strand, 52699192 - 52699265
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccac 957  Q
    ||||||||| ||||||||||||| | |||||||| |||||  ||| |  ||||||| |||| ||||||||||||    
T  52699192 gtgagtttaactcagttgataggaatattgcatattatatacaggggttggagttcgaacctcagacatcccac 52699265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000003; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 879 - 939
Target Start/End: Complemental strand, 20872530 - 20872470
Alignment:
Q  879 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttc 939  Q
    |||||||||| ||| |||||||||||||||||||||||||| |||| ||| | ||||||||    
T  20872530 ttcctgtgagcttagctcagttgatagggacattgcataatttatgcaggggtcggagttc 20872470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 885 - 959
Target Start/End: Original strand, 12770372 - 12770446
Alignment:
Q  885 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||| ||| |||||||||||||||||||||||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  12770372 tgagcttagctcagttgatagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccactt 12770446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 881 - 946
Target Start/End: Complemental strand, 23435303 - 23435238
Alignment:
Q  881 cctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 946  Q
    |||||||| ||| ||||||||||||||| |||||||| |||||| ||||| ||| |||| ||||||    
T  23435303 cctgtgagcttagctcagttgatagggatattgcatattatatgcaggagccggggttcgaacccc 23435238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 889 - 953
Target Start/End: Complemental strand, 12510497 - 12510433
Alignment:
Q  889 tttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatc 953  Q
    |||| |||| || ||||||||||||||||||||||||| | | |||||||| |||| ||||||||    
T  12510497 tttaactcaattaatagggacattgcataatatatgtatgggtcggagttcgaacctcagacatc 12510433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 951
Target Start/End: Original strand, 42880951 - 42881018
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    ||||| ||| |||||||| |||||| |||||||| |||||||||||| ||| |||| |||||| ||||    
T  42880951 gtgagcttaactcagttggtagggatattgcatattatatgtaggagccggggttcgaaccccggaca 42881018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 885 - 959
Target Start/End: Original strand, 11231424 - 11231498
Alignment:
Q  885 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||| ||| ||||||||| |||||||||||||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  11231424 tgagcttagctcagttgaaagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccactt 11231498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 924
Target Start/End: Complemental strand, 24696068 - 24696027
Alignment:
Q  883 tgtgagtttatctcagttgatagggacattgcataatatatg 924  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  24696068 tgtgagattatctcagttgatatggacaatgcataatatatg 24696027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.0000000001; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 884 - 959
Target Start/End: Complemental strand, 2488953 - 2488878
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||||||| |||||||| ||||||||||| ||||| | || ||| | |||||||| |||||| ||||||||||||    
T  2488953 gtgagtttagctcagttggtagggacattgtataatttctgcaggggtcggagttcgaaccccggacatcccactt 2488878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 879 - 923
Target Start/End: Original strand, 28957104 - 28957148
Alignment:
Q  879 ttcctgtgagtttatctcagttgatagggacattgcataatatat 923  Q
    |||||||||||||| |||||||||||  |||||||||||||||||    
T  28957104 ttcctgtgagtttaactcagttgataaagacattgcataatatat 28957148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 887 - 939
Target Start/End: Original strand, 30527768 - 30527820
Alignment:
Q  887 agtttatctcagttgatagggacattgcataatatatgtaggagacggagttc 939  Q
    ||||||||||| |||||||||| |||||||||||||| ||||||  |||||||    
T  30527768 agtttatctcaattgatagggatattgcataatatatataggagttggagttc 30527820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 887 - 926
Target Start/End: Original strand, 10999153 - 10999192
Alignment:
Q  887 agtttatctcagttgatagggacattgcataatatatgta 926  Q
    |||||| ||||||||||| |||||||||||||||||||||    
T  10999153 agtttaactcagttgataaggacattgcataatatatgta 10999192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 883 - 946
Target Start/End: Complemental strand, 24623379 - 24623316
Alignment:
Q  883 tgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaacccc 946  Q
    |||||||||| ||||||||||| ||||| ||||||||||||||| |   ||| |||||||||||    
T  24623379 tgtgagtttagctcagttgatatggacaatgcataatatatgtaaggttcggggttcaaacccc 24623316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 951
Target Start/End: Original strand, 30938391 - 30938458
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    ||||| ||| |||||||| |||||||||||||||||||||| |||   ||| |||| |||||||||||    
T  30938391 gtgagcttaactcagttggtagggacattgcataatatatgcagggaccggggttcgaaccccagaca 30938458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 883 - 926
Target Start/End: Original strand, 33608336 - 33608379
Alignment:
Q  883 tgtgagtttatctcagttgatagggacattgcataatatatgta 926  Q
    |||||||||||||||||||||| ||||| || ||||||||||||    
T  33608336 tgtgagtttatctcagttgataaggacaatgtataatatatgta 33608379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 926
Target Start/End: Complemental strand, 16453398 - 16453356
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgta 926  Q
    |||||||||||||||||| |||||||| | |||||||||||||    
T  16453398 gtgagtttatctcagttggtagggacaatacataatatatgta 16453356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 883 - 924
Target Start/End: Original strand, 2692214 - 2692255
Alignment:
Q  883 tgtgagtttatctcagttgatagggacattgcataatatatg 924  Q
    |||||| ||||||||||||||| ||||| |||||||||||||    
T  2692214 tgtgagattatctcagttgatatggacaatgcataatatatg 2692255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 881 - 926
Target Start/End: Complemental strand, 14945577 - 14945532
Alignment:
Q  881 cctgtgagtttatctcagttgatagggacattgcataatatatgta 926  Q
    |||||||| ||| |||||||||||| |||| |||||||||||||||    
T  14945577 cctgtgagcttagctcagttgatagagacagtgcataatatatgta 14945532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 894 - 951
Target Start/End: Original strand, 27218897 - 27218954
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    ||||||||||||||| |||||||| |||||||||||| |||  ||| |||||| ||||    
T  27218897 ctcagttgatagggatattgcatattatatgtaggagccgggattcgaaccccggaca 27218954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 884 - 959
Target Start/End: Complemental strand, 52309177 - 52309102
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| ||||||||||| |||||||    
T  52309177 gtgagcttaactcagttggtagggatattgcatactatatgcaggagtcggggttcgaaccccagacaccccactt 52309102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 884 - 926
Target Start/End: Original strand, 31085008 - 31085050
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgta 926  Q
    ||||||||||||||||||||| ||||| |||||||||||||||    
T  31085008 gtgagtttatctcagttgataaggacagtgcataatatatgta 31085050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 881 - 959
Target Start/End: Complemental strand, 53432807 - 53432729
Alignment:
Q  881 cctgtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||||||||| |||||||| |||||| |||||||| |||||| ||| | ||| |||| |||||| |||| |||||||    
T  53432807 cctgtgagtttaactcagttggtagggatattgcatattatatgcaggggccggggttcgaaccccggacaccccactt 53432729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 273
Target Start/End: Complemental strand, 30443858 - 30443733
Alignment:
Q  150 tactccctatggacctttttagaagtgacaaatgagtcaataaaagttgatgtaattggttc-ttatatagaccaaatacatcaa-ttttattgatctat 247  Q
    ||||||||  || |||||||| ||| |||||||  |||||  |||||||||||| ||||||| | ||||||||||||||||| || |||| |||| | ||    
T  30443858 tactccctccggtcctttttacaagagacaaattggtcaactaaagttgatgtatttggttcataatatagaccaaatacattaacttttgttgacccat 30443759  T
Q  248 tcgtctcttataaaaatgaccggagg 273  Q
    | || ||||||||||| ||| |||||    
T  30443758 ttgtttcttataaaaaagacgggagg 30443733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 884 - 924
Target Start/End: Complemental strand, 12976663 - 12976623
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatg 924  Q
    ||||||||| ||||||||||||||||| |||||||||||||    
T  12976663 gtgagtttaactcagttgatagggacaatgcataatatatg 12976623  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 959
Target Start/End: Complemental strand, 4227811 - 4227736
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    ||||||||| |||||||| ||||||||||||||||| |||| ||| | ||| |||| ||| || |||| |||||||    
T  4227811 gtgagtttagctcagttggtagggacattgcataatttatgcaggggtcggggttcgaactccggacaccccactt 4227736  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 926
Target Start/End: Original strand, 7827508 - 7827550
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgta 926  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||    
T  7827508 gtgagtttaactcagttgatatggacaatgcataatatatgta 7827550  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 884 - 926
Target Start/End: Original strand, 7829896 - 7829938
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgta 926  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||    
T  7829896 gtgagtttaactcagttgatatggacaatgcataatatatgta 7829938  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 894 - 928
Target Start/End: Complemental strand, 35718613 - 35718579
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtagg 928  Q
    |||||||| ||||||||||||||||||||||||||    
T  35718613 ctcagttggtagggacattgcataatatatgtagg 35718579  T

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Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 885 - 959
Target Start/End: Complemental strand, 49443489 - 49443415
Alignment:
Q  885 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||||| |||| |||  |||||||||||||||| |||| ||| | |||||||| |||||| |||| |||||||    
T  49443489 tgagtttagctcaattggcagggacattgcataatttatgcaggggccggagttcgaaccccggacaccccactt 49443415  T

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Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 881 - 930
Target Start/End: Original strand, 48251572 - 48251621
Alignment:
Q  881 cctgtgagtttatctcagttgatagggacattgcataatatatgtaggag 930  Q
    |||||||| ||| ||||||||||||||| |||||||| |||||| |||||    
T  48251572 cctgtgagcttagctcagttgatagggatattgcatattatatgcaggag 48251621  T

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Target: scaffold0330 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0330
Description:

Target: scaffold0330; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 894 - 959
Target Start/End: Original strand, 6781 - 6846
Alignment:
Q  894 ctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||||||| |||||| |||||||| |||||||||||| ||  |||| ||||||| |||||||||||    
T  6781 ctcagttggtagggatattgcatattatatgtaggagtcgaggttcgaaccccaaacatcccactt 6846  T

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Target: scaffold0445 (Bit Score: 32; Significance: 0.00000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 884 - 951
Target Start/End: Complemental strand, 4081 - 4014
Alignment:
Q  884 gtgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    ||||| ||| |||||||| |||||| |||||||| |||||| ||||| ||| |||| |||||||||||    
T  4081 gtgagcttagctcagttggtagggatattgcatattatatgcaggagtcggggttcgaaccccagaca 4014  T

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Target: scaffold0519 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 885 - 959
Target Start/End: Complemental strand, 3028 - 2954
Alignment:
Q  885 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagacatcccactt 959  Q
    |||| ||| ||||||||| |||||||||||||||| |||| ||| | ||| |||| |||||| |||| |||||||    
T  3028 tgagcttagctcagttgaaagggacattgcataatttatgcaggggccggggttcgaaccccggacaccccactt 2954  T

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Target: scaffold0012 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 885 - 951
Target Start/End: Original strand, 122550 - 122616
Alignment:
Q  885 tgagtttatctcagttgatagggacattgcataatatatgtaggagacggagttcaaaccccagaca 951  Q
    |||||||| || ||||| |||| |||||| |||||||||||||| | || ||||| |||||||||||    
T  122550 tgagtttaacttagttggtaggaacattgtataatatatgtaggggtcgaagttcgaaccccagaca 122616  T

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Target: scaffold0031 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 879 - 928
Target Start/End: Complemental strand, 50073 - 50024
Alignment:
Q  879 ttcctgtgagtttatctcagttgatagggacattgcataatatatgtagg 928  Q
    |||| ||||| ||| ||||||||||||||| |||||||| ||||||||||    
T  50073 ttcccgtgagcttaactcagttgatagggatattgcatattatatgtagg 50024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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