View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12583_low_13 (Length: 249)
Name: NF12583_low_13
Description: NF12583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12583_low_13 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 139; Significance: 8e-73; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 7810702 - 7810467
Alignment:
| Q |
1 |
taactatatatcttaatgaactaattaaattaagtcataagctagattactatattacggttaacgtattatgcatacctannnnnnnggatcatgctaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
7810702 |
taactatatatcttaatgaactaattaaattaagtcataagctagattactatatgacggttaacgtattatgcataccta-ttttttggatcatgctaa |
7810604 |
T |
|
| Q |
101 |
actactctctctgagatactagttaagaaagtaaaaaata-nnnnnnnnnattgaaaacgatgannnnnnnactttcaataagttgaacgtgccatattt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||| |
|
|
| T |
7810603 |
actactctctctgagatactagttaagaaagtaaaaaatatcttcttttttttaaaaacgatgatttttttacttttaataagttgaacgtgccatattt |
7810504 |
T |
|
| Q |
200 |
tactacataccgatacaagatttctacattagttttc |
236 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7810503 |
tactacataccgatacaagatttctacattagttttc |
7810467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University