View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12583_low_16 (Length: 235)
Name: NF12583_low_16
Description: NF12583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12583_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 6e-95; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 13244110 - 13243893
Alignment:
| Q |
3 |
tctctagaccaatttgtagccacttttgtagcttccaaatacatttcggaatatagtgtctacgcaataccatatcctcaagtacactaatagctttttc |
102 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13244110 |
tctctagaccaatttgtagccacttttgtagcttccaaatacatttcggaatatagtgtctacgcaataccatatcctcaagtacactaaaagctttttc |
13244011 |
T |
|
| Q |
103 |
ataagcaatatctgataactcgttgcacttgtaaggaaggcaattaggatcgaatccnnnnnnnnnngtgcaagaaatatcaaaggtaaacctctcaaga |
202 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13244010 |
ataagcaatatctgataactcattgcacttgtaaggaaggcaattaggatcgaatccaaaaaaaaaagtgcaagaaatatcaaaggtaaacctctcaaga |
13243911 |
T |
|
| Q |
203 |
atatcttgtaaatcaagt |
220 |
Q |
| |
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| |||||||||||||||| |
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| T |
13243910 |
acatcttgtaaatcaagt |
13243893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 3 - 219
Target Start/End: Complemental strand, 19278733 - 19278517
Alignment:
| Q |
3 |
tctctagaccaatttgtagccacttttgtagcttccaaatacatttcggaatatagtgtctacgcaataccatatcctcaagtacactaatagctttttc |
102 |
Q |
| |
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||||| ||||||| |||||||||||||| ||||||||||||||||| || |||||||||||| ||||| || ||||||||| ||||||| ||||||| | |
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| T |
19278733 |
tctcttgaccaatgtgtagccacttttgcagcttccaaatacattttggcatatagtgtctatacaatagcaaatcctcaaggacactaacagcttttac |
19278634 |
T |
|
| Q |
103 |
ataagcaatatctgataactcgttgcacttgtaaggaaggcaattaggatcgaatccnnnnnnnnnngtgcaagaaatatcaaaggtaaacctctcaaga |
202 |
Q |
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|||||||||||| |||||||||||| |||||||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| | |
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| T |
19278633 |
ataagcaatatccgataactcgttgtacttgtaaggaagggaattaggatcgaatccaaataaaaaaatgcaagtaatatcaaaggtaaacctctcaata |
19278534 |
T |
|
| Q |
203 |
atatcttgtaaatcaag |
219 |
Q |
| |
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| ||||||||||||||| |
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| T |
19278533 |
acatcttgtaaatcaag |
19278517 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 3 - 153
Target Start/End: Complemental strand, 12963476 - 12963326
Alignment:
| Q |
3 |
tctctagaccaatttgtagccacttttgtagcttccaaatacatttcggaatatagtgtctacgcaataccatatcctcaagtacactaatagctttttc |
102 |
Q |
| |
|
||||| |||||||||||||||| |||||||||||||||| |||||| ||||||||||| ||| ||||| | ||||||||| ||| |||||||||| | |
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| T |
12963476 |
tctcttgaccaatttgtagccatttttgtagcttccaaaaacattttggaatatagtgcctaaacaatatcgtatcctcaatcacagaaatagcttttac |
12963377 |
T |
|
| Q |
103 |
ataagcaatatctgataactcgttgcacttgtaaggaaggcaattaggatc |
153 |
Q |
| |
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||| ||||||||||| ||||| ||| ||||||||||||||||||||||||| |
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| T |
12963376 |
atacgcaatatctgaaaactcattgaacttgtaaggaaggcaattaggatc |
12963326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 3 - 220
Target Start/End: Complemental strand, 13080451 - 13080234
Alignment:
| Q |
3 |
tctctagaccaatttgtagccacttttgtagcttccaaatacatttcggaatatagtgtctacgcaataccatatcctcaagtacactaatagctttttc |
102 |
Q |
| |
|
||||| ||||||| |||| ||| ||||||||||||||||||||||| ||||||||||| || ||| | || ||||||| ||| ||||||||| | |
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|
| T |
13080451 |
tctcttgaccaatctgtaaccatttttgtagcttccaaatacattttggaatatagtgcctcgacaagatcacatcctcagtcacagatatagcttttac |
13080352 |
T |
|
| Q |
103 |
ataagcaatatctgataactcgttgcacttgtaaggaaggcaattaggatcgaatccnnnnnnnnnngtgcaagaaatatcaaaggtaaacctctcaaga |
202 |
Q |
| |
|
||||| ||||||||||| ||| || | |||| |||||||||||||||||| ||||| |||||| ||| |||||||| |||||||||||| |
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|
| T |
13080351 |
ataagaaatatctgatatctcactgaaattgttaggaaggcaattaggatcaaatccaaatacagaagtgcaaataatgtcaaaggtgaacctctcaaga |
13080252 |
T |
|
| Q |
203 |
atatcttgtaaatcaagt |
220 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
13080251 |
atatcttgtaaatcaagt |
13080234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 13272222 - 13272439
Alignment:
| Q |
3 |
tctctagaccaatttgtagccacttttgtagcttccaaatacatttcggaatatagtgtctacgcaataccatatcctcaagtacactaatagctttttc |
102 |
Q |
| |
|
||||| ||||||| |||||||| || ||||||||||||| |||||| |||| | |||| ||| |||||| ||||||||| ||| |||||||||| | |
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|
| T |
13272222 |
tctcttgaccaatatgtagccatttctgtagcttccaaacacattttggaacagagtgcctatgcaataatgtatcctcaatcacagaaatagcttttac |
13272321 |
T |
|
| Q |
103 |
ataagcaatatctgataactcgttgcacttgtaaggaaggcaattaggatcgaatccnnnnnnnnnngtgcaagaaatatcaaaggtaaacctctcaaga |
202 |
Q |
| |
|
||||||||| ||| | ||| ||| ||||||||||||| ||||||||||| ||||| | |||| |||||||||||| |||||||||| | |
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| T |
13272322 |
ataagcaatttctcgaagctcattgaacttgtaaggaagacaattaggatcaaatccaaataaaaaattacaagtaatatcaaaggtgaacctctcaata |
13272421 |
T |
|
| Q |
203 |
atatcttgtaaatcaagt |
220 |
Q |
| |
|
|||||||||||||||||| |
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| T |
13272422 |
atatcttgtaaatcaagt |
13272439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 220
Target Start/End: Original strand, 13086743 - 13086960
Alignment:
| Q |
3 |
tctctagaccaatttgtagccacttttgtagcttccaaatacatttcggaatatagtgtctacgcaataccatatcctcaagtacactaatagctttttc |
102 |
Q |
| |
|
||||| |||||||||||||||| ||||||| |||||||| |||| ||||||||||| ||| ||||| ||||||||| | |||||||||| | |
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|
| T |
13086743 |
tctcttgaccaatttgtagccatttttgtaacttccaaaagtattttggaatatagtgcctagacaatattgtatcctcaataatcgaaatagcttttac |
13086842 |
T |
|
| Q |
103 |
ataagcaatatctgataactcgttgcacttgtaaggaaggcaattaggatcgaatccnnnnnnnnnngtgcaagaaatatcaaaggtaaacctctcaaga |
202 |
Q |
| |
|
|| |||||| |||| ||| || ||| |||||||||||||| | ||||||| ||||| |||| | ||||||||||||||||||||||||| |
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|
| T |
13086843 |
atgagcaatctctggtaattcattgaacttgtaaggaaggaacctaggatcaaatccaaacaacaaaatgcatgtaatatcaaaggtaaacctctcaaga |
13086942 |
T |
|
| Q |
203 |
atatcttgtaaatcaagt |
220 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
13086943 |
atatcttgtaaatcaagt |
13086960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 216
Target Start/End: Complemental strand, 12963300 - 12963263
Alignment:
| Q |
179 |
atatcaaaggtaaacctctcaagaatatcttgtaaatc |
216 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
12963300 |
atatcgaaggtgaacctctcaagaatatcttgtaaatc |
12963263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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