View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12583_low_18 (Length: 224)
Name: NF12583_low_18
Description: NF12583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12583_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 164
Target Start/End: Original strand, 32571183 - 32571333
Alignment:
| Q |
14 |
cataggctgcagctaataggttcatgtcccaaccaatgctccaagcatttgggttatgctccataacaaaagtcacagcaattgattgaagtgtgcccaa |
113 |
Q |
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| T |
32571183 |
cataggctgcagctaataagttcatgtcccaaccaatgcaccaagcatttgggttatgctccataacaaaagtcacatcaattgattgaagtgtgcccaa |
32571282 |
T |
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| Q |
114 |
ggaacacactatggctgtgagtgagagttgagctgaatatttccttaatgt |
164 |
Q |
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| T |
32571283 |
ggaacacactatggctgtgagtgagagttgagctgagtatttcctcaatgt |
32571333 |
T |
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Target: chr6 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 1616631 - 1616801
Alignment:
| Q |
14 |
cataggctgcagctaataggttcatgtcccaaccaatgctccaagcatttgggttatgctccataacaaaagtcacagcaattgattgaagtgtgcccaa |
113 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1616631 |
cataggctgcagctaataagttcatgtcccaaccaatgcaccaagcatttgggttatgctccataacaaaagtcacatcaattgattgaagtgtgcccaa |
1616730 |
T |
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| Q |
114 |
ggaacacactatggctgtgagtgagagttgagctgaatatttccttaatgtcacagcctgcattaatcaca |
184 |
Q |
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| T |
1616731 |
ggaaaatattatggctgtgagtgagagttgagctgagtatttcctcaatgtcacaaccttcattaatcaca |
1616801 |
T |
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