View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12583_low_3 (Length: 789)
Name: NF12583_low_3
Description: NF12583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12583_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 20 - 525
Target Start/End: Complemental strand, 41134079 - 41133573
Alignment:
| Q |
20 |
gttccttcattcaatgtacttaccataaacggttgagtcttaaacaacttatttctgatttctatgtatctcggtatgttctcatttattactactttag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41134079 |
gttccttcattcaatgtacttaccataaacggttgagtcttaaacaacttatttctgatttctatgtatctcggtatgttctcatttattactactttag |
41133980 |
T |
|
| Q |
120 |
ttcactcgtgtcttcgttcttacaccaagatttcaaatgcatcacacccttttcttatcaatgaatttttcttcatttttagatcatgattcatgatggt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41133979 |
ttcactcgtgtcttcgttcttacaccaagatttcaaatgcatcacacccttttcttatcaatgaatttttcttcatttttagatcatgattcatgatggt |
41133880 |
T |
|
| Q |
220 |
gtgtcttttgatataataatatgtaaccaatctaacaagtaacaaactctgtgtttannnnnnnattgttgttaaatatgaaattttgttatttacatat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
41133879 |
gtgtcttttgatataataatatgtaaccaatctaacaagtaacaaactctgtgtttatttttttattgttgttaaatatgaaattttgttatttacatat |
41133780 |
T |
|
| Q |
320 |
tctttgttctacttgtc-nnnnnnnnnntattatttgttctatttttagcttatgtttttgtttgtgctttgtcaggataacgttggacagattgatcac |
418 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41133779 |
tctttgttctacttgtcaaaaaaaaatatattatttgttctatttttagcttatgtttttgtttgtgctttgtcaggataacgttggacagattgatcac |
41133680 |
T |
|
| Q |
419 |
ttacacgacctaaaaccacttctagatttggtcctttatgtttttggcattagtttgttgagtacttcacattaccacattgttgttattcctttatctg |
518 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41133679 |
ttacacgacctaaaaccacttctagatttggtcctttatgtttttggcattagtttgttgagtacttcacattaccacattgttgttattcctttttctg |
41133580 |
T |
|
| Q |
519 |
caaatac |
525 |
Q |
| |
|
||||||| |
|
|
| T |
41133579 |
caaatac |
41133573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 584 - 759
Target Start/End: Complemental strand, 41133514 - 41133339
Alignment:
| Q |
584 |
atgtattggtgatttaccaagatgtcaaaatttgagggtgttatcgtatctgatcaattgcttcaaagccagtttacacaggttgaacttcgcagcctta |
683 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41133514 |
atgtattggtgatttaccaagatgtcaaaatttgagggtgttattgtatctgatcaattgcttcaaagccagtttacacaggttgaacttcgcagcctta |
41133415 |
T |
|
| Q |
684 |
aatcaaaagtaagttcttttctttctttccttatacaaaggaccttttggtccaatttcatgttttgtatgtgtta |
759 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41133414 |
aatcaaaagtaagttcttttctttctttccttatacaaaggacattttggtccaatttcatgttttgtatgtgtta |
41133339 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University