View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12583_low_4 (Length: 442)
Name: NF12583_low_4
Description: NF12583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12583_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 16 - 418
Target Start/End: Original strand, 34759174 - 34759575
Alignment:
| Q |
16 |
caatattgaggattcaatggaggccacattgtgtttgaatatttggaagtgtttttcgtgctctacatcatccttgcagacctttccatattgtgtcatc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34759174 |
caatattgaggattcaatggaggccacattgtgtttgaatatttggaagtgtttttcgtgctctacatcatccttgcagacctttccatattatgtcatc |
34759273 |
T |
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| Q |
116 |
cagagcttgtatctttctgctaatgatgcctcatcaacttggtcttggatgccatgggacaaatatccaaattcctattagtatgttgattagagtacaa |
215 |
Q |
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| T |
34759274 |
cagagcttgtatctttctgctaatgatgcatcatcaacttggtcttggatgccatgggacaaatatccaaattcctattagtatgttgattagagtacaa |
34759373 |
T |
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| Q |
216 |
aggtacttgttttgttctatcaaaccctaaacgtgtttggctacgcacttccaaattgtgatagtannnnnnnggtacaatcagtattttttgtagcata |
315 |
Q |
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| T |
34759374 |
aggtgcttgttttgttctatcaaaccctaaaagtgtttggctacgcacttccaacttgtggtagtatttttttggtacaatcagtattttttgtagcata |
34759473 |
T |
|
| Q |
316 |
tagacactataaattttctatgtgaaagacggtaatgtgtgatgag-ttttttatgtttgtaatgcgaaaattatatcaaatatatattttcattgtgaa |
414 |
Q |
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| T |
34759474 |
tagacactataaattttctatgtgaaagaaggtaatgtgcgataagtttttttgtgtttgtaatgcgaaaattatatcaa--atatattttcattgtgaa |
34759571 |
T |
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| Q |
415 |
gacg |
418 |
Q |
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|||| |
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| T |
34759572 |
gacg |
34759575 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 29 - 118
Target Start/End: Original strand, 29734033 - 29734122
Alignment:
| Q |
29 |
tcaatggaggccacattgtgtttgaatatttggaagtgtttttcgtgctctacatcatccttgcagacctttccatattgtgtcatccag |
118 |
Q |
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| T |
29734033 |
tcaatgtaggccacattgtgtttgaatatttgaaagtgttttttctgttctgcaacatccttgtagacaactccatattttgtcttccag |
29734122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 30057108 - 30057175
Alignment:
| Q |
24 |
aggattcaatggaggccacattgtgtttgaatatttggaagtgtttttcgtgctctacatcatccttg |
91 |
Q |
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| T |
30057108 |
aggaatcaatgtaggcaacattgtgtttgaatatttggatgtgcttttcctcctctgcatcatccttg |
30057175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 25 - 71
Target Start/End: Original strand, 29606976 - 29607022
Alignment:
| Q |
25 |
ggattcaatggaggccacattgtgtttgaatatttggaagtgttttt |
71 |
Q |
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| T |
29606976 |
ggattcaatgtagatcacattgtgtttgaatatttggaagtgttttt |
29607022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 71
Target Start/End: Complemental strand, 29746193 - 29746146
Alignment:
| Q |
24 |
aggattcaatggaggccacattgtgtttgaatatttggaagtgttttt |
71 |
Q |
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||||||||||| || |||||||||||||||||||| ||||||||||| |
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| T |
29746193 |
aggattcaatgtagatcacattgtgtttgaatatttcgaagtgttttt |
29746146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 217
Target Start/End: Original strand, 30057271 - 30057306
Alignment:
| Q |
182 |
ccaaattcctattagtatgttgattagagtacaaag |
217 |
Q |
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||||||| |||||||||||||||||||||||||||| |
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| T |
30057271 |
ccaaattactattagtatgttgattagagtacaaag |
30057306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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