View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12583_low_6 (Length: 408)
Name: NF12583_low_6
Description: NF12583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12583_low_6 |
 | |
|
| [»] scaffold1064 (2 HSPs) |
| | |
|
| [»] scaffold0038 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 339; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 393
Target Start/End: Complemental strand, 9238620 - 9238226
Alignment:
| Q |
1 |
caagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctct-aacactgagaattgacaacaagtcagccataagccttgcc |
99 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||| | |
|
|
| T |
9238620 |
caagctttgtggttggattcatcaatgaaagagattaagtgtgaagtgatgaagcctcttaacactgagaattgacaacaagtcagccataagtcttgtc |
9238521 |
T |
|
| Q |
100 |
aagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtc |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
9238520 |
aagaatcccatctctcatggtagaagcaaacatattgagactagatttcgtttcatttggaagcaggtgactaatggtatgattgagttgcagtattgtc |
9238421 |
T |
|
| Q |
200 |
ctacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagtt |
298 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9238420 |
ctacataattgcagcttgcagatggctttacaaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagtt |
9238321 |
T |
|
| Q |
299 |
ataaattaagggggagtattagaatatgaatacataattggttagatataatattaatgtgattcacattgcaagcataatatctattcttctct |
393 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9238320 |
atgaattaaggggaagtattagaatatgaatacatcattggttagatataatattaatgtgattcacattgcaagcataatctctattcttctct |
9238226 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 10 - 352
Target Start/End: Original strand, 26904959 - 26905298
Alignment:
| Q |
10 |
tggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatccca |
109 |
Q |
| |
|
||||||||||||| ||||||||| | ||||| ||| |||| ||||||||||||| ||||||||||| ||||||||||| ||||| ||||| || | |
|
|
| T |
26904959 |
tggttggattcagtgatgaaagagatcaagtgcgaa----tgaaacctctaacactgaagattgacaacaaatcagccataagtcttgctaagaacccta |
26905054 |
T |
|
| Q |
110 |
tctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataatt |
209 |
Q |
| |
|
| |||||||||| ||||||||| |||||||||||||| | |||||| || |||| ||| ||||| ||||||||| | || |||||||||| | || | |
|
|
| T |
26905055 |
tttctcatggtataagcaaacacattgagactagattccacttcattggggagcagatgaataatgaaatgattgagctacattattgtcctatagaact |
26905154 |
T |
|
| Q |
210 |
gcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaag |
308 |
Q |
| |
|
|||||||||| ||||||||| ||| ||||||||||||||| |||| ||||||| ||||| |||||||||||||| || ||| ||||||||| |||||| |
|
|
| T |
26905155 |
gcagcttgcatgtggctttacaaaggctttgaagcttgacaaatttaaatttttaaggaagaaacttggtgttgttaatatttagcagttatgaattaat |
26905254 |
T |
|
| Q |
309 |
ggggagtattagaatatgaatacataattggttagatataatat |
352 |
Q |
| |
|
|||||||||||| |||| ||||||||| || | ||||||||||| |
|
|
| T |
26905255 |
ggggagtattagtatattaatacataactgttgagatataatat |
26905298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 5706787 - 5707123
Alignment:
| Q |
1 |
caagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgcca |
100 |
Q |
| |
|
||||| || ||| ||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||| ||| ||||||| ||||| | |
|
|
| T |
5706787 |
caagcattatggctggattcagtgatgaaagagctcaagtgtgaagtgataaagcctctgacactgaagattgacaacaaatcatccataagtcttgcta |
5706886 |
T |
|
| Q |
101 |
agaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcc |
200 |
Q |
| |
|
||| ||| |||||||||| ||||| ||||| | ||||| ||||| | ||||||| || |||||||||||||||| ||||||||| |||| || || || |
|
|
| T |
5706887 |
agagtcctgtctctcatggcagaagtaaacacttagagaccagattccatttcattagggagcaagtgactaatggaatgattgagctgcactactgccc |
5706986 |
T |
|
| Q |
201 |
tacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagtta |
299 |
Q |
| |
|
||| || | || ||||| ||||||||||| || | |||||||||||| |||||||||| ||||||| ||| | |||| | || |||||||||||| |
|
|
| T |
5706987 |
cacagaactacaacttgccgatggctttacaaatgcagtgaagcttgacaaatttgaatttgtgaggaagaaattaagtgtatttaatattcagcagtta |
5707086 |
T |
|
| Q |
300 |
taaattaagggggagtattagaatatgaatacataattg |
338 |
Q |
| |
|
| ||||| |||||||||| |||||| ||| ||||||| |
|
|
| T |
5707087 |
t-gattaa-ggggagtattggaatattaatcaataattg |
5707123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 5 - 281
Target Start/End: Original strand, 9880909 - 9881190
Alignment:
| Q |
5 |
ctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaac-aagtcagccataagccttgccaaga |
103 |
Q |
| |
|
|||||||||| ||||||| |||||||||||||| |||||| | ||||||||||||| || | |||||||||| || || ||||||| ||||| |||| |
|
|
| T |
9880909 |
ctttgtggttagattcagtgatgaaagagcttaaatgtgaaattgtgaagcctctaaccctcataattgacaacaaaatctaccataagtcttgctaaga |
9881008 |
T |
|
| Q |
104 |
atcccatctctcatggtagaagcaaacatattgagact-agattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtccta |
202 |
Q |
| |
|
|||||||||| |||||||||||||| || || |||||| | ||| | ||| ||| || |||| |||||||||| |||| |||| |||| |||||||| | |
|
|
| T |
9881009 |
atcccatctcacatggtagaagcaagcacatagagactaaaattccattttattagggagcagatgactaatggaatgaatgaggtgcaatattgtccca |
9881108 |
T |
|
| Q |
203 |
cataattgcagcttgcagatggctttac-aagac-tttgaagcttgac-atatttgaatttttgaggaaaaaacttggtgtt |
281 |
Q |
| |
|
| | ||||| ||||||||||| ||||| ||| | | || |||||| | |||||||||||||||||| |||||||||||| |
|
|
| T |
9881109 |
ctgagttgcaacttgcagatggttttactaaggcagtaaaaacttgacaaaatttgaatttttgaggaagaaacttggtgtt |
9881190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: scaffold1064
Description:
Target: scaffold1064; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 178 - 385
Target Start/End: Complemental strand, 2417 - 2209
Alignment:
| Q |
178 |
atgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa-gactttgaagcttgacatatttgaatttttgaggaaaaaacttg |
276 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||||||||||| |
|
|
| T |
2417 |
atgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaagactttgaagcttgaaatattttaatttttgaggaaaaaacttg |
2318 |
T |
|
| Q |
277 |
gtgttgtgaacattcagcagttataaattaagggggagtattagaatatgaatacataattggttagatataatattaatgtgattcacattgcaagcat |
376 |
Q |
| |
|
|||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
2317 |
gtgttgtgaacattaagcagttatgaattaagggggagtattagaatattaatacataattggttagatataatattaatgagattcacattgtaagcat |
2218 |
T |
|
| Q |
377 |
aatatctat |
385 |
Q |
| |
|
||| ||||| |
|
|
| T |
2217 |
aatctctat |
2209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1064; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 2547 - 2416
Alignment:
| Q |
1 |
caagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgcca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || |
|
|
| T |
2547 |
caagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacattgagaattgacaacaagtcagccataagccttgtca |
2448 |
T |
|
| Q |
101 |
agaatcccatctctcatggtagaagcaaacat |
132 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
2447 |
agaatcccatctctcatggtagaagcaaacat |
2416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 168; Significance: 6e-90; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 25 - 335
Target Start/End: Complemental strand, 38099651 - 38099340
Alignment:
| Q |
25 |
atgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaa |
124 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||||||| ||||||||||| ||| ||||||| ||||| | |||||| || ||||||||||||| |
|
|
| T |
38099651 |
atgaaagagctcaagtgtgaagtgatgaaacctctaacactgaagattgacaacaaatcaaccataagtcttgctaggaatcctatttctcatggtagaa |
38099552 |
T |
|
| Q |
125 |
gcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatgg |
224 |
Q |
| |
|
|||||| |||||||||||||| | ||||||| || ||| ||||||||||||||||||||| | || |||||||||||| ||||| |||| ||| |||| |
|
|
| T |
38099551 |
tcaaacacattgagactagattccatttcattagggagcgagtgactaatggtatgattgaactacaatattgtcctacagaattgtagctagcatatgg |
38099452 |
T |
|
| Q |
225 |
ctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagaat |
323 |
Q |
| |
|
|||||| ||| |||||||||||| ||||||||||||||||||||| |||||||||||||| ||||||||||| |||| |||||||||||||| ||||||| |
|
|
| T |
38099451 |
ctttacaaaggctttgaagcttggcatatttgaatttttgaggaagaaacttggtgttgttaacattcagcaattatgaattaagggggagtgttagaat |
38099352 |
T |
|
| Q |
324 |
atgaatacataa |
335 |
Q |
| |
|
|| ||||||||| |
|
|
| T |
38099351 |
attaatacataa |
38099340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 25 - 329
Target Start/End: Original strand, 301980 - 302284
Alignment:
| Q |
25 |
atgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaa |
124 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||| ||||| ||||||| ||||| ||||| || | |
|
|
| T |
301980 |
atgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaattgacaacaaatcagccacaagtcttgcaaagaatctaatctcacatggcagga |
302079 |
T |
|
| Q |
125 |
gcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatgg |
224 |
Q |
| |
|
| ||||| |||||||| ||||| ||||||||| |||| ||||||||||| ||||||||| |||| || || || ||| || | || ||||| ||||| |
|
|
| T |
302080 |
gtaaacacattgagaccagattcaatttcatttgagagcaggtgactaatggaatgattgagctgcactactgccccacaaaactacaacttgctgatgg |
302179 |
T |
|
| Q |
225 |
ctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagaat |
323 |
Q |
| |
|
||||||| | | |||||||||||| ||||||||| |||||||| ||| | |||||| | || ||||| ||||||| |||||||||||||||| |||| |
|
|
| T |
302180 |
ttttacaaaagcaatgaagcttgacagatttgaattcttgaggaagaaattaggtgtttttaatattcaacagttat-gattaagggggagtattggaat |
302278 |
T |
|
| Q |
324 |
atgaat |
329 |
Q |
| |
|
|||||| |
|
|
| T |
302279 |
atgaat |
302284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 10 - 281
Target Start/End: Original strand, 3461412 - 3461684
Alignment:
| Q |
10 |
tggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatccca |
109 |
Q |
| |
|
||||||||||||| ||||| || ||||||||||||||||||||||||||||||||| |||||| || || ||||||||||| |||| |||||||| | |
|
|
| T |
3461412 |
tggttggattcagtgatgaaggaatttaagtgtgaagtgatgaagcctctaacactgaaaattgataataaatcagccataagtcttgtaaagaatccaa |
3461511 |
T |
|
| Q |
110 |
tctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataatt |
209 |
Q |
| |
|
||| ||||| || || ||||| |||||||| | ||| | ||| ||| | |||| ||||||||||| ||||||||| |||| ||||| || ||| || | |
|
|
| T |
3461512 |
tcttacatggcaggagtaaacacattgagaccatattccattttattagagagcatgtgactaatggaatgattgagctgcactattgccccacagaact |
3461611 |
T |
|
| Q |
210 |
gcagcttgcagatggctttacaa-gactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgtt |
281 |
Q |
| |
|
||| ||||| ||||| ||||||| | | | |||||||||||||||||||| ||||| || ||||||||||| |
|
|
| T |
3461612 |
gcaacttgctgatggttttacaaaggcagtaaagcttgacatatttgaattcttgagaaaggaacttggtgtt |
3461684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 325
Target Start/End: Complemental strand, 39190997 - 39190839
Alignment:
| Q |
167 |
tgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgag |
265 |
Q |
| |
|
|||||||||| ||||||||| |||| || || || ||| || |||| ||||| ||||| ||| ||| | | |||||||||||| ||||||||| ||||| |
|
|
| T |
39190997 |
tgactaatggaatgattgagctgcactactgccccacagaactgcaacttgctgatggttttgcaaaagcagtgaagcttgacagatttgaattcttgag |
39190898 |
T |
|
| Q |
266 |
gaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagaatat |
325 |
Q |
| |
|
||| ||| | |||||| | || || |||||||||| ||||||||||||||||||||||| |
|
|
| T |
39190897 |
gaagaaattaggtgtttttaatatgcagcagttat-gattaagggggagtattagaatat |
39190839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 114; Significance: 1e-57; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 100 - 335
Target Start/End: Original strand, 6414319 - 6414556
Alignment:
| Q |
100 |
aagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtc |
199 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||| ||||||||| ||||||| || |||| ||||||||||| ||||||||||||| || |||| |
|
|
| T |
6414319 |
aagaatcccatctctcatggcggaagcaaacacattgggactagattctatttcattagggagcaggtgactaatggagtgattgagttgcattactgtc |
6414418 |
T |
|
| Q |
200 |
ctacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagtt |
298 |
Q |
| |
|
||||| ||||||||||||||||||| ||||| ||| ||||||||||||| | |||| || |||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
6414419 |
ctacagaattgcagcttgcagatggttttacaaaggctttgaagcttgatagatttaaacttttgaggaagaaacttgttgttgttaacattcagcagtt |
6414518 |
T |
|
| Q |
299 |
ataaattaa-gggggagtattagaatatgaatacataa |
335 |
Q |
| |
|
|| |||||| |||||||||||||||| | ||||||||| |
|
|
| T |
6414519 |
attaattaaggggggagtattagaatgttaatacataa |
6414556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 25 - 325
Target Start/End: Complemental strand, 37787115 - 37786815
Alignment:
| Q |
25 |
atgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaa |
124 |
Q |
| |
|
||||| || |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||| ||||| |||||||| ||||| ||||| |||| |
|
|
| T |
37787115 |
atgaaggaacttaagtgtgaagtgatgaagcctctaacactgaaaattgacaacaaatcagccataagtcttgcaaagaatccaatctcacatggcagaa |
37787016 |
T |
|
| Q |
125 |
gcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatgg |
224 |
Q |
| |
|
| ||||| |||||||| | ||| | ||||||| | |||||||||||||||| ||||||||| |||| || || || ||| || | || ||||| ||||| |
|
|
| T |
37787015 |
gtaaacacattgagaccatattccatttcattagagagcaagtgactaatggaatgattgagctgcactactgccccacagaactacaacttgctgatgg |
37786916 |
T |
|
| Q |
225 |
ctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtattagaat |
323 |
Q |
| |
|
||||||| | | |||||||||||| ||||||||| |||||||| ||| | |||||| | || ||||||||||||| |||||||||||||||| |||| |
|
|
| T |
37786915 |
ttttacaaaagcagtgaagcttgacagatttgaattcttgaggaataaattaggtgtttttaatattcagcagttat-gattaagggggagtattggaat |
37786817 |
T |
|
| Q |
324 |
at |
325 |
Q |
| |
|
|| |
|
|
| T |
37786816 |
at |
37786815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 106; Significance: 6e-53; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 1 - 281
Target Start/End: Original strand, 14233733 - 14234014
Alignment:
| Q |
1 |
caagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgcca |
100 |
Q |
| |
|
|||||| ||||||| ||||||| ||||| |||||||| |||||||| ||||||||||||| || |||||||||||||| || ||||||||||||| | |
|
|
| T |
14233733 |
caagctatgtggttagattcagtgatgaaggagcttaaatgtgaagtagtgaagcctctaaccctcagaattgacaacaaatcttccataagccttgcta |
14233832 |
T |
|
| Q |
101 |
agaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcc |
200 |
Q |
| |
|
||||||| ||||| |||||||||||||| || |||||||| ||||| | ||||||| || |||| ||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
14233833 |
agaatcctatctcacatggtagaagcaagcacattgagaccagattccatttcattagggagcaggtgactaatggaatgattgaggtgcaatattgtcc |
14233932 |
T |
|
| Q |
201 |
tacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgtt |
281 |
Q |
| |
|
|| | |||| ||||||||||| ||||| ||| | | || ||||||| |||||||||||| ||||| |||||||||||| |
|
|
| T |
14233933 |
cactgagctgcaacttgcagatggttttactaaggcagtaaaacttgacagatttgaattttttaggaagaaacttggtgtt |
14234014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 31000575 - 31000638
Alignment:
| Q |
252 |
tttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagt |
315 |
Q |
| |
|
||||||||||||||||| ||||||| |||| | |||||||||||||||| |||||||||||||| |
|
|
| T |
31000575 |
tttgaatttttgaggaagaaacttgatgtttttaacattcagcagttatgaattaagggggagt |
31000638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 14 - 325
Target Start/End: Original strand, 296704 - 297016
Alignment:
| Q |
14 |
tggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctc |
113 |
Q |
| |
|
||||||||| || |||||||| ||||||||||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||| ||||||||| |||| |
|
|
| T |
296704 |
tggattcagtgataaaagagctcaagtgtgaagtgatgaagcctctgacactgaagattgacaacaaatcagccataagtcttgctaagaatcccgtctc |
296803 |
T |
|
| Q |
114 |
tcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcag |
213 |
Q |
| |
|
|||||| | ||| ||||| |||||||| ||||| | ||||||| || |||| ||||||||||| ||||| |||||||| || || || ||| || | || |
|
|
| T |
296804 |
tcatggcaaaagtaaacacattgagaccagattccatttcattagggagcaggtgactaatggaatgatagagttgcactactgccccacagaactacaa |
296903 |
T |
|
| Q |
214 |
cttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtg-ttgtgaacattcagcagttataaattaagggg |
311 |
Q |
| |
|
|||| ||||| ||||||| | | ||||||||||| ||||||||| |||||||| ||| | |||| || | || ||||||||||||| ||||||||| |
|
|
| T |
296904 |
cttgttgatggttttacaaaagcagcgaagcttgacacatttgaattcttgaggaagaaattaggtgttttttaatattcagcagttat-gattaagggg |
297002 |
T |
|
| Q |
312 |
gagtattagaatat |
325 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
297003 |
gagtattagaatat |
297016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 13 - 338
Target Start/End: Original strand, 30380282 - 30380606
Alignment:
| Q |
13 |
ttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatct |
112 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||| |||||||||||| ||||||||||| ||||||||||| ||||| ||||||| |||| |
|
|
| T |
30380282 |
ttggattcagtgatgaaagagctcaagtgtgaagtgatgaaacctctaacactggagattgacaacaaatcagccataagtcttgcttagaatccaatct |
30380381 |
T |
|
| Q |
113 |
ctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgca |
212 |
Q |
| |
|
| ||||| | ||| ||||| |||||||| ||||| | ||||||| | |||| ||||||||||| ||||||||| | || || | | | ||| || |||| |
|
|
| T |
30380382 |
cacatggcaaaagtaaacacattgagaccagattccatttcattagagagcaggtgactaatggaatgattgagctacactactatacaacagaactgca |
30380481 |
T |
|
| Q |
213 |
gcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggg |
311 |
Q |
| |
|
|||||| |||| ||||||| | | ||||||||||||||||| |||||||||||||||||||||||||| | | |||| ||||||| |||||||| |
|
|
| T |
30380482 |
acttgcatatgg-tttacaaaagcagtgaagcttgacatattttaatttttgaggaaaaaacttggtgtttttgatgttcaacagttat-gattaaggga |
30380579 |
T |
|
| Q |
312 |
gagtattagaatatgaatacataattg |
338 |
Q |
| |
|
||||||||||||| ||| ||||||| |
|
|
| T |
30380580 |
aagtattagaatattaatcaataattg |
30380606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 281
Target Start/End: Original strand, 35898321 - 35898508
Alignment:
| Q |
95 |
ttgccaagaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagta |
194 |
Q |
| |
|
|||| |||||||| || || ||||| || || ||||| |||||||| ||||| | ||||||| | |||| ||||||||||| ||||||||| |||| || |
|
|
| T |
35898321 |
ttgcaaagaatccaatatcacatggcaggagtaaacacattgagaccagattccatttcattagagagcaggtgactaatggaatgattgagctgcacta |
35898420 |
T |
|
| Q |
195 |
ttgtcctacataattgcagcttgcagatggcttt-acaagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgtt |
281 |
Q |
| |
|
||| | || || |||| ||||| |||||||| | ||| | ||||| |||||| ||||||||| |||||||| ||||||||||| |
|
|
| T |
35898421 |
ttgctccacggaactgcaacttgcttatggctttaaaaaggcagtgaagtttgacagatttgaattcttgaggaaggaacttggtgtt |
35898508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 338
Target Start/End: Complemental strand, 18641486 - 18641150
Alignment:
| Q |
1 |
caagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgcca |
100 |
Q |
| |
|
||||| || ||| ||||||||| ||||||||||| |||||||||||||| |||||||| ||||||| ||||||||||| ||| ||||||| ||||| | |
|
|
| T |
18641486 |
caagcattatggctggattcagtgatgaaagagctcaagtgtgaagtgataaagcctctgacactgaagattgacaacaaatcatccataagtcttgcta |
18641387 |
T |
|
| Q |
101 |
agaatcccatctctcatggtagaagcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcc |
200 |
Q |
| |
|
||| ||| |||||||||| ||||| ||||| | ||||| ||||| | ||||||| || |||||||||||||||| ||||||||| |||| || || || |
|
|
| T |
18641386 |
agagtcctgtctctcatggcagaagtaaacacttagagaccagattccatttcattagggagcaagtgactaatggaatgattgagctgcactactgccc |
18641287 |
T |
|
| Q |
201 |
tacataattgcagcttgcagatggctttac-aagactttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagtta |
299 |
Q |
| |
|
||| || | || ||||| ||||||||||| || | |||||||||||| |||||||||| ||||||| ||| | |||| | || |||||||||||| |
|
|
| T |
18641286 |
cacagaactacaacttgccgatggctttacaaatgcagtgaagcttgacaaatttgaatttgtgaggaagaaattaagtgtatttaatattcagcagtta |
18641187 |
T |
|
| Q |
300 |
taaattaagggggagtattagaatatgaatacataattg |
338 |
Q |
| |
|
| ||||| |||||||||| |||||| ||| ||||||| |
|
|
| T |
18641186 |
t-gattaa-ggggagtattggaatattaatcaataattg |
18641150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 1 - 83
Target Start/End: Original strand, 34982966 - 34983048
Alignment:
| Q |
1 |
caagctttgtggttggattcagcaatgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtc |
83 |
Q |
| |
|
|||| ||| |||||||| | ||| ||||||||||| |||||||||||| ||||||||||||||| || |||||||| ||||| |
|
|
| T |
34982966 |
caagttttatggttggaattagcgatgaaagagctcaagtgtgaagtggtgaagcctctaacacagatgattgacaataagtc |
34983048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 45 - 281
Target Start/End: Complemental strand, 50778598 - 50778361
Alignment:
| Q |
45 |
agtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaagcaaacatattgagactaga |
144 |
Q |
| |
|
||||||||||||||||||||||| |||||| || || ||||||||||| ||||| |||||||| ||||| ||||| || || ||||| |||||||| ||| |
|
|
| T |
50778598 |
agtgatgaagcctctaacactgaaaattgataataaatcagccataagtcttgcaaagaatccaatctcacatggcaggagtaaacacattgagaccaga |
50778499 |
T |
|
| Q |
145 |
ttgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaa-gactttgaagc |
243 |
Q |
| |
|
|| | ||||||| | |||| ||||||||| | ||||||||| |||| ||||| || ||| || |||| ||||| ||||||||||||| | | | |||| |
|
|
| T |
50778498 |
ttccatttcattagagagcaggtgactaattgaatgattgagctgcactattgccccacagaactgcaacttgctgatggctttacaaaggcagtaaagc |
50778399 |
T |
|
| Q |
244 |
ttgacatatttgaatttttgaggaaaaaacttggtgtt |
281 |
Q |
| |
|
|||||| |||||||||||| ||||| ||||||||||| |
|
|
| T |
50778398 |
ttgacagatttgaattttttaggaaggaacttggtgtt |
50778361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0038 (Bit Score: 79; Significance: 8e-37; HSPs: 1)
Name: scaffold0038
Description:
Target: scaffold0038; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 25 - 318
Target Start/End: Original strand, 48964 - 49257
Alignment:
| Q |
25 |
atgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaa |
124 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||| ||||||| ||||||||||| |||| |||||| ||||| |||||| |||||||||| |||| |
|
|
| T |
48964 |
atgaaagagctcaagtgtgaagtggtaaagcctctgacactgaagattgacaacaaatcaggcataagtcttgctaagaatattgtctctcatggcagaa |
49063 |
T |
|
| Q |
125 |
gcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatgg |
224 |
Q |
| |
|
| ||||| ||| ||| ||||| | ||||||| | |||| ||||||||||| |||||||||||||| || || || ||| || | || ||||| ||||| |
|
|
| T |
49064 |
gtaaacacatttcgaccagattccatttcattagagagcatgtgactaatggaatgattgagttgcactactgccccacagaactacaacttgctgatgg |
49163 |
T |
|
| Q |
225 |
ctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtatt |
318 |
Q |
| |
|
||||||| | | |||||||||||| ||||||||| |||||||| ||| | |||||| | || |||||| |||||| |||||||||||||||| |
|
|
| T |
49164 |
ttttacaaaagcagtgaagcttgacaaatttgaattcttgaggaagaaattaggtgttcttaatattcagtagttat-gattaagggggagtatt |
49257 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 79; Significance: 8e-37; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 25 - 318
Target Start/End: Original strand, 28248802 - 28249095
Alignment:
| Q |
25 |
atgaaagagcttaagtgtgaagtgatgaagcctctaacactgagaattgacaacaagtcagccataagccttgccaagaatcccatctctcatggtagaa |
124 |
Q |
| |
|
||||||||||| |||||||||||| | |||||||| ||||||| ||||||||||| |||| |||||| ||||| |||||| |||||||||| |||| |
|
|
| T |
28248802 |
atgaaagagctcaagtgtgaagtggtaaagcctctgacactgaagattgacaacaaatcaggcataagtcttgctaagaatattgtctctcatggcagaa |
28248901 |
T |
|
| Q |
125 |
gcaaacatattgagactagattgcgtttcatttggaagcaagtgactaatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatgg |
224 |
Q |
| |
|
| ||||| ||| ||| ||||| | ||||||| | |||| ||||||||||| |||||||||||||| || || || ||| || | || ||||| ||||| |
|
|
| T |
28248902 |
gtaaacacatttcgaccagattccatttcattagagagcatgtgactaatggaatgattgagttgcactactgccccacagaactacaacttgctgatgg |
28249001 |
T |
|
| Q |
225 |
ctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaagggggagtatt |
318 |
Q |
| |
|
||||||| | | |||||||||||| ||||||||| |||||||| ||| | |||||| | || |||||| |||||| |||||||||||||||| |
|
|
| T |
28249002 |
ttttacaaaagcagtgaagcttgacaaatttgaattcttgaggaagaaattaggtgttcttaatattcagtagttat-gattaagggggagtatt |
28249095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 171 - 319
Target Start/End: Complemental strand, 29011122 - 29010973
Alignment:
| Q |
171 |
taatggtatgattgagttgcagtattgtcctacataattgcagcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaa |
269 |
Q |
| |
|
|||||| ||| ||||| |||||| |||||||||| || |||| |||||| |||| ||||| | | ||||||| ||||||| |||| | ||||| ||||| |
|
|
| T |
29011122 |
taatggaatggttgagctgcagttttgtcctacagaactgcaacttgcatatggttttactaaagctttgaaacttgacaaatttaagttttttaggaag |
29011023 |
T |
|
| Q |
270 |
aaacttggtgttgtgaacattcagcagttataaattaagggggagtatta |
319 |
Q |
| |
|
|||||||||||| | | ||||| ||||||| ||||||| ||||||||| |
|
|
| T |
29011022 |
aaacttggtgttttcagtattcaacagttatgaattaagatggagtatta |
29010973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 11187090 - 11186979
Alignment:
| Q |
212 |
agcttgcagatggctttacaaga-ctttgaagcttgacatatttgaatttttgaggaaaaaacttggtgttgtgaacattcagcagttataaattaaggg |
310 |
Q |
| |
|
||||||||||||| ||||||| | | |||| ||| || ||||||||||||||||||| ||||| ||| || | | |||||||||||| | ||||||| |
|
|
| T |
11187090 |
agcttgcagatggttttacaaaagcagtgaaacttcacgtatttgaatttttgaggaagaaactaggtatttttgatgttcagcagttatga-ttaaggg |
11186992 |
T |
|
| Q |
311 |
ggagtattagaat |
323 |
Q |
| |
|
||||||||||||| |
|
|
| T |
11186991 |
ggagtattagaat |
11186979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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