View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12583_low_7 (Length: 373)
Name: NF12583_low_7
Description: NF12583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12583_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 6e-99; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 157 - 351
Target Start/End: Original strand, 26609700 - 26609894
Alignment:
| Q |
157 |
agagagaggtgtattcaaatcatttcctagatactcgtatgaggctataaagggccttaagaaaactgcaaactatagagagctcaattattttaagatt |
256 |
Q |
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| T |
26609700 |
agagagaggtgtattcaaatcatttcctagatactcgtatgaggctataaagggccttaagaaaactgcaaactatagagagctcaattattttaagatt |
26609799 |
T |
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| Q |
257 |
ttgaggttgttgcatgtaaacttcttcctctagaaagtcattgcaaaatgctttatttacatcaagttgtttcaagggccatctataagagacat |
351 |
Q |
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| T |
26609800 |
ttgaggttgttgcatgcaaacttcttcctctagaaagtcattgcaaaatcctttatttacatcaagttgtttcaaggggcatctataagagacat |
26609894 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 12 - 133
Target Start/End: Original strand, 26609563 - 26609684
Alignment:
| Q |
12 |
agagattagaataatatctgtggatacaaatttaacatagagaatagatataaaacctgatgttgatgattgttactcnnnnnnnggatctcacttgttg |
111 |
Q |
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| T |
26609563 |
agagattagaatagtctatgtggatacaaatttaacatagagagtagatataaaacctgatgttgatgattgttactcaaagaaaggatctcacttgttg |
26609662 |
T |
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| Q |
112 |
actttgaaaccaaactgaataa |
133 |
Q |
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| T |
26609663 |
actttgaaaccaaactgaataa |
26609684 |
T |
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