View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12583_low_8 (Length: 363)
Name: NF12583_low_8
Description: NF12583
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12583_low_8 |
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| [»] scaffold0421 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 156; Significance: 8e-83; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 18 - 177
Target Start/End: Original strand, 30219511 - 30219670
Alignment:
| Q |
18 |
aagtgtacaatcagcatttatgtatcaatcaaaatcaaggtagctatgccgtaactatataaaaatgaaattgctactagtgtatatattaatatcaagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30219511 |
aagtgtacaatcagcatttatgtatcaatcaaaatcaaggtagctatgccgtaactatataaaaatgaaattgctactagtgtatatattaatatcaagg |
30219610 |
T |
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| Q |
118 |
ggacttggctttttgtagccaagtgtcagatttcgaagtaccaaatataaaaatctcttg |
177 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30219611 |
ggacttggctttttgtagccaagtgtcagattttgaagtaccaaatataaaaatctcttg |
30219670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 212 - 355
Target Start/End: Original strand, 30219711 - 30219854
Alignment:
| Q |
212 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30219711 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctg |
30219810 |
T |
|
| Q |
312 |
gaattagctattccaattgatgactcacaaactatgcctttgct |
355 |
Q |
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| T |
30219811 |
gaattagctattccaattgatgactcacaaactatgcctttgct |
30219854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 212 - 332
Target Start/End: Complemental strand, 30049253 - 30049133
Alignment:
| Q |
212 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||| ||| || |
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| T |
30049253 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtcctcatggtcaatacttcaacagctctgtgatatgttcatatgtttttgcctttttg |
30049154 |
T |
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| Q |
312 |
gaattagctattccaattgat |
332 |
Q |
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||||||||||||||| ||||| |
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| T |
30049153 |
gaattagctattccatttgat |
30049133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 212 - 332
Target Start/End: Complemental strand, 30063594 - 30063474
Alignment:
| Q |
212 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctg |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||| |||||||||||||||||||||||||||| ||| || |
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| T |
30063594 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtcctcatggtcaatacttcaacagctctgtgatatgttcatatgtttttgcctttttg |
30063495 |
T |
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| Q |
312 |
gaattagctattccaattgat |
332 |
Q |
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||||||||||||||| ||||| |
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| T |
30063494 |
gaattagctattccatttgat |
30063474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 212 - 339
Target Start/End: Complemental strand, 30033153 - 30033026
Alignment:
| Q |
212 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctg |
311 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |
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| T |
30033153 |
cataatggacaagttctatgaagaagttcaagagccagtgagtccccatggacaatatttcaacagctctgtcatatgttcatatgtttttggctttctg |
30033054 |
T |
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| Q |
312 |
gaattagctattccaattgatgactcac |
339 |
Q |
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|| || ||||||||| ||||| |||||| |
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| T |
30033053 |
gagtttgctattccatttgataactcac |
30033026 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 212 - 332
Target Start/End: Complemental strand, 30229364 - 30229244
Alignment:
| Q |
212 |
cataatggacaaattcaatgaagaagttcaagagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctg |
311 |
Q |
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|||||||||||||||| || |||||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| |||||| |
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| T |
30229364 |
cataatggacaaattctttggagaagttcaagagccagtgagtcctcatggacaatatttcaacagctctgtgatgtgttcatatgtttttggctttctg |
30229265 |
T |
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| Q |
312 |
gaattagctattccaattgat |
332 |
Q |
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|||||||| |||||| ||||| |
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| T |
30229264 |
gaattagcgattccatttgat |
30229244 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 347
Target Start/End: Complemental strand, 30264932 - 30264828
Alignment:
| Q |
243 |
gagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaattagctattccaattgatgactcacaaa |
342 |
Q |
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|||||||| |||||| ||||||||||||||| | | || ||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||| |
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| T |
30264932 |
gagccagtaagtccaagtggacaatatttcaacacccctcccctatgttcatatgtttttggatttttggaattagaaattccaattgatgactctcaag |
30264833 |
T |
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| Q |
343 |
ctatg |
347 |
Q |
| |
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||||| |
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| T |
30264832 |
ctatg |
30264828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 243 - 347
Target Start/End: Original strand, 30287256 - 30287360
Alignment:
| Q |
243 |
gagccagtgagtccacatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaattagctattccaattgatgactcacaaa |
342 |
Q |
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|||||||| |||||| ||||||||||||||| | | || ||||||||||||||||||| ||| ||||||||| ||||||||||||||||| ||| |
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| T |
30287256 |
gagccagtaagtccaagtggacaatatttcaacacccctcccctatgttcatatgtttttggatttttggaattagaaattccaattgatgactctcaag |
30287355 |
T |
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| Q |
343 |
ctatg |
347 |
Q |
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||||| |
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| T |
30287356 |
ctatg |
30287360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0421 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0421
Description:
Target: scaffold0421; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 257 - 334
Target Start/End: Original strand, 13768 - 13845
Alignment:
| Q |
257 |
acatggacaatatttcaatagctctgtgatatgttcatatgtttttgggtttctggaattagctattccaattgatga |
334 |
Q |
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|||||||||||||||||| |||||||| |||||| ||| ||||||||| ||||||||||||||||| |||||| |||| |
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| T |
13768 |
acatggacaatatttcaacagctctgtaatatgtgcatttgtttttggctttctggaattagctataccaatttatga |
13845 |
T |
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