View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12584_high_1 (Length: 368)
Name: NF12584_high_1
Description: NF12584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12584_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 331; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 12 - 350
Target Start/End: Complemental strand, 35482496 - 35482158
Alignment:
| Q |
12 |
cacagaaacaactataccaacctttccgaccaccaccaacacctctaccatcaaaatacgacaacctcgacatcccaggtcgcattgacatcctcgccaa |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
35482496 |
cacagaaacaactataccaacctttccgaccaccaccaacacctctcccatcaaaatacgacaacctcgacatcccaggtcgcatcgacatcctcgccaa |
35482397 |
T |
|
| Q |
112 |
ccgtctcggtgcctggcacgaatacgctcctctcatcacttccctcctccgtgaaggcttttcacctcccacccttgaagaaaccaccggcatcaccggt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35482396 |
ccgtctcggtgcctggcacgaatacgctcctctcatcacttccctcctccgtgaaggcttttcacctcccacccttgaagaaaccaccggcatcaccggt |
35482297 |
T |
|
| Q |
212 |
gtcgaacagaatcgtatcatagtcgcaactcaagttcgtgacactcttgtacaggccaacactgatgaagagattctatcttactttgatagcggtggtg |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35482296 |
gtcgaacagaatcgtatcatagtcgcaactcaagttcgtgacactcttgtacaggccaacactgatgaagagattctatcttactttgatagcggtggtg |
35482197 |
T |
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| Q |
312 |
ctgaagttttatatgaaattcgtctcctctccacttccc |
350 |
Q |
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||||||||||||||||||||||||||||||||||||||| |
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| T |
35482196 |
ctgaagttttatatgaaattcgtctcctctccacttccc |
35482158 |
T |
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