View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12584_low_1 (Length: 433)
Name: NF12584_low_1
Description: NF12584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12584_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 32 - 423
Target Start/End: Original strand, 30278329 - 30278719
Alignment:
| Q |
32 |
aaaagctcaagaatgcctatactgggagttacgaaccgaaccttttgggccataactctcgatcgctcaagttcggaggttacaacccgatctactttta |
131 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30278329 |
aaaagctcaagaatgcctatactgggagttacgaaccgaaccttttgggccataactctcgatcgctcaagttcggaggttacaacccgatctactttta |
30278428 |
T |
|
| Q |
132 |
catatatatcaggccacctttcttgtactacactactttccttagaagttccatttttcttttgcgaaagaagcgtgtcttagttcatcattgaaagatt |
231 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30278429 |
catatatatcaggccaccttccttgtactacactactttccttagaagttccatttttcttttgcgaaagaagcgtgtcttagttcatcattgaaagatt |
30278528 |
T |
|
| Q |
232 |
gttttctttttcaaatgtatatattgccattagaatactatgaactatgatatgatgatacctataacgattgttaatgtctaaatccgtttttttcttt |
331 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
30278529 |
gttttctttttcaaatgtatatattgccattagaatactatgaactatgatatgatgatacctataacgattgctaatgtctaaatccgtttttttcttt |
30278628 |
T |
|
| Q |
332 |
tgattaaatcggnnnnnnnnnnattagagctgaaagaaatttttcgaaattagcaatgttacaagatagattgaatgagaattggtcttctt |
423 |
Q |
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|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30278629 |
tgattaaatc-gttttttttttattagagctgaaagaaatttttcgaaattagcaatgttacaagatagattgaatgagaattggtcttctt |
30278719 |
T |
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