View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12584_low_4 (Length: 308)
Name: NF12584_low_4
Description: NF12584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12584_low_4 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 17 - 308
Target Start/End: Complemental strand, 14167289 - 14166998
Alignment:
| Q |
17 |
catacttccggccatcttcgccaggcaagtcctttttccattaactcttaacaatatgcaatattagatcatgatcgcggacaaaagattgatttcaatt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14167289 |
catacttccggccatcttcgccaggcaagtcctttttccattaactcttaacaatatgcaatattagatcatgatcgcggacaaaagattgatttcaatt |
14167190 |
T |
|
| Q |
117 |
acatatatgaaaattaggaatttaacataatgtgatatttcttgaaatcacggtttcttgattttgtggttgattttttgagcagcttttggtagggcta |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14167189 |
acatatatgaaaattaggaatttaacataatgtgatatttcttgaaatcatggtttcttgattttgtggttgattttttgagcagcttttggtagggcta |
14167090 |
T |
|
| Q |
217 |
gtgactgcatttaggtatgttggtgacgagatcaatccaaaattggcgcaaactgaagctggaattcttcatgagtcagtgaacgagcagaa |
308 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
14167089 |
gtgactgcatttaggtatgttggtgatgagatcaatccaaaattggcgcaaactgaagctggaattcttcatgagtcagtgaaagagaagaa |
14166998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 272
Target Start/End: Original strand, 5180772 - 5180852
Alignment:
| Q |
192 |
ttttgagcagcttttggtagggctagtgactgcatttaggtatgttggtgacgagatcaatccaaaattggcgcaaactga |
272 |
Q |
| |
|
|||||||||||||||||| || | |||| |||||||||||| || || ||||||||| |||||||||| |||||||| |
|
|
| T |
5180772 |
ttttgagcagcttttggttggattggtgagctcatttaggtatgagggagatgagatcaatgcaaaattggcacaaactga |
5180852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University