View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12584_low_7 (Length: 239)

Name: NF12584_low_7
Description: NF12584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12584_low_7
NF12584_low_7
[»] chr6 (8 HSPs)
chr6 (19-199)||(6765227-6765407)
chr6 (19-198)||(6773279-6773458)
chr6 (19-199)||(6756659-6756839)
chr6 (19-198)||(6773471-6773650)
chr6 (39-198)||(6756488-6756646)
chr6 (19-129)||(6773663-6773773)
chr6 (19-97)||(6756851-6756929)
chr6 (147-198)||(6756419-6756470)
[»] chr1 (3 HSPs)
chr1 (19-189)||(40137381-40137551)
chr1 (19-132)||(40137247-40137360)
chr1 (24-100)||(40023935-40024011)
[»] scaffold0299 (8 HSPs)
scaffold0299 (39-199)||(14553-14713)
scaffold0299 (19-199)||(20111-20291)
scaffold0299 (19-186)||(14922-15090)
scaffold0299 (19-186)||(20495-20663)
scaffold0299 (39-199)||(20303-20463)
scaffold0299 (39-198)||(14731-14890)
scaffold0299 (51-132)||(14443-14524)
scaffold0299 (51-132)||(20001-20082)


Alignment Details
Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 6765227 - 6765407
Alignment:
Q  19 cccttatgtctttccaattgatgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattata 118  Q
    ||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||| ||    
T  6765227 cccttatttcttttcaattgatgtctttccaactttttgcatctaagaaggacttgagcgcattgttttcatcatctgaccatggcttaccattattgta 6765326  T
Q  119 tctaattttcggatcttgtctttccattttaaaaagtttccttgccttgtcccgaatcgctttcaaatcccaaccaaacaa 199  Q
    | ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  6765327 tttaattttcggatcttgtctttccatattaaaaagtttccttgccttgtcccgaatcgctttcaaatcccgaccaaacaa 6765407  T

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Target: chr6; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 6773279 - 6773458
Alignment:
Q  19 cccttatgtctttccaattgatgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattata 118  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||||| ||    
T  6773279 cccttatgtctttccaattgatgtctttccaactttttgcatctaagaaggacttgagcgcattgttttcatcatctgaccatggtttaccaatattgta 6773378  T
Q  119 tctaattttcggatcttgtctttccattttaaaaagtttccttgccttgtcccgaatcgctttcaaatcccaaccaaaca 198  Q
    ||||||||||||||||||||||||| ||||||||  ||| || ||||||||| ||||||| |||||||||| ||||||||    
T  6773379 tctaattttcggatcttgtctttcctttttaaaattttttctggccttgtcctgaatcgcattcaaatcccgaccaaaca 6773458  T

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Target: chr6; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 19 - 199
Target Start/End: Original strand, 6756659 - 6756839
Alignment:
Q  19 cccttatgtctttccaattgatgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattata 118  Q
    |||||||||||| ||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||| || |||||| ||||||||||||| ||    
T  6756659 cccttatgtcttaccaattgatgtctttcctactttttgcatctaagaaggacttgagcgcattgtttttatcatccgaccatcgcttaccaatattgta 6756758  T
Q  119 tctaattttcggatcttgtctttccattttaaaaagtttccttgccttgtcccgaatcgctttcaaatcccaaccaaacaa 199  Q
    |||||||| | |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| |||||||||    
T  6756759 tctaatttacagatcttgtctttcctttttaaaaagtttccttgccttgtcccgaatcactttcaaatcccgaccaaacaa 6756839  T

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Target: chr6; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 198
Target Start/End: Original strand, 6773471 - 6773650
Alignment:
Q  19 cccttatgtctttccaattgatgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattata 118  Q
    |||||||||||| ||||||||| | |||||||||| |||||| ||||||||  ||||| |||||||||||||| ||||||||||||||||||||||| ||    
T  6773471 cccttatgtcttcccaattgatttctttccaacttattgcatataagaagggtttgagcgcattgttttcatcatctgaccatggcttaccaatattgta 6773570  T
Q  119 tctaattttcggatcttgtctttccattttaaaaagtttccttgccttgtcccgaatcgctttcaaatcccaaccaaaca 198  Q
    ||||||||||||||||||| ||||| ||||||||| |||||| ||||||||| |||| || |||||||||| ||||||||    
T  6773571 tctaattttcggatcttgtatttcctttttaaaaaatttcctggccttgtcctgaattgcattcaaatcccgaccaaaca 6773650  T

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Target: chr6; HSP #5
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 39 - 198
Target Start/End: Original strand, 6756488 - 6756646
Alignment:
Q  39 atgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattatatctaattttcggatcttgtc 138  Q
    |||| |||||||| |||||| |||||||| |||||| | |||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||||    
T  6756488 atgtctttccaaccttttgcttctaagaaagacttgtgcgcattgttttcatcatttgaccatggcttaccaatattgtatctaattttcggatcttgtc 6756587  T
Q  139 tttccattttaaaaagtttccttgccttgtcccgaatcgctttcaaatcccaaccaaaca 198  Q
    ||||| ||||||||| |||| | ||||||||| ||||||| |||||||||| ||||||||    
T  6756588 tttcc-ttttaaaaaatttcttggccttgtcctgaatcgcattcaaatcccgaccaaaca 6756646  T

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Target: chr6; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 6773663 - 6773773
Alignment:
Q  19 cccttatgtctttccaattgatgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattata 118  Q
    |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |||||||||| ||| ||||||||  |||||||| |||| ||    
T  6773663 cccttatgtctttccaattgatgtctttccgactttttgcatctaagaaggacttgagcgcattgtttttatcatctgaccaacgcttaccagtattgta 6773762  T
Q  119 tctaattttcg 129  Q
    || ||||||||    
T  6773763 tccaattttcg 6773773  T

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Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 19 - 97
Target Start/End: Original strand, 6756851 - 6756929
Alignment:
Q  19 cccttatgtctttccaattgatgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctga 97  Q
    |||| |||||||| |||||||||| || ||||||||||| |||||||| |||||||||  |||| |||||||| |||||    
T  6756851 ccctgatgtcttttcaattgatgtcttcccaactttttgtatctaagacggacttgagcacattattttcatcatctga 6756929  T

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Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 6756419 - 6756470
Alignment:
Q  147 ttaaaaagtttccttgccttgtcccgaatcgctttcaaatcccaaccaaaca 198  Q
    ||||||| |||||||||||||||| ||||||| |||||||||| ||||||||    
T  6756419 ttaaaaaatttccttgccttgtcctgaatcgcattcaaatcccgaccaaaca 6756470  T

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Target: chr1 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 40137551 - 40137381
Alignment:
Q  19 cccttatgtctttccaattgatgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattata 118  Q
    ||||||| |||| ||||||||||| ||||||||||||||||||||||| ||||||||| |||||||||||||| | |||||||||||||||| |||| ||    
T  40137551 cccttatctcttcccaattgatgtctttccaactttttgcatctaagagggacttgagggcattgttttcatcatgtgaccatggcttaccagtattgta 40137452  T
Q  119 tctaattttcggatcttgtctttccattttaaaaagtttccttgccttgtcccgaatcgctttcaaatccc 189  Q
    ||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||||||||||||||||    
T  40137451 tctaattttcggatcttgtattttctttttaaaaagtttccttgccttgtcccgaatcgctttcaaatccc 40137381  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 132
Target Start/End: Complemental strand, 40137360 - 40137247
Alignment:
Q  19 cccttatgtctttccaattgatgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattata 118  Q
    |||| ||||||||||||||||||| || ||||||||||| ||||| ||||||||||||   |||| ||||||| ||||||||  |||||||| |||| ||    
T  40137360 ccctgatgtctttccaattgatgtcttcccaactttttgaatctatgaaggacttgagcaaattgatttcatcatctgaccaatgcttaccactattgta 40137261  T
Q  119 tctaattttcggat 132  Q
    || |||||||||||    
T  40137260 tccaattttcggat 40137247  T

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Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 24 - 100
Target Start/End: Complemental strand, 40024011 - 40023935
Alignment:
Q  24 atgtctttccaattgatgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgacca 100  Q
    |||||| |||||||||||| |||||||||||||||||||||||||||||||||  |||||||||| || ||||||||    
T  40024011 atgtctctccaattgatgtctttccaactttttgcatctaagaaggacttgagcacattgttttcttcatctgacca 40023935  T

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Target: scaffold0299 (Bit Score: 113; Significance: 2e-57; HSPs: 8)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 14713 - 14553
Alignment:
Q  39 atgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattatatctaattttcggatcttgtc 138  Q
    |||| ||||||| ||||||||||||||||||||||||| |||||||||| ||| ||||||||| ||||||||||||| ||||||||||| |||| |||||    
T  14713 atgtctttccaaatttttgcatctaagaaggacttgagcgcattgtttttatcatctgaccatcgcttaccaatattgtatctaatttttggatattgtc 14614  T
Q  139 tttccattttaaaaagtttccttgccttgtcccgaatcgctttcaaatcccaaccaaacaa 199  Q
    |||||||| |||||| ||||||||||||||||||||||||||||||||||| |||||||||    
T  14613 tttccattataaaaattttccttgccttgtcccgaatcgctttcaaatcccgaccaaacaa 14553  T

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Target: scaffold0299; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 19 - 199
Target Start/End: Complemental strand, 20291 - 20111
Alignment:
Q  19 cccttatgtctttccaattgatgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattata 118  Q
    |||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||||||| ||| ||| |||||  |||||||||||| ||    
T  20291 cccttatgtctttccaattgatgtctttccaaatttttgcatctaagaaggacttgagcgcattgtttttatcatctaaccatcacttaccaatattgta 20192  T
Q  119 tctaattttcggatcttgtctttccattttaaaaagtttccttgccttgtcccgaatcgctttcaaatcccaaccaaacaa 199  Q
    |||| |||| |||| |||||||||| || ||||||||||||||||||||||||||||| |||||||||||  |||||||||    
T  20191 tctagtttttggatattgtctttcctttataaaaagtttccttgccttgtcccgaatcactttcaaatccggaccaaacaa 20111  T

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Target: scaffold0299; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 15090 - 14922
Alignment:
Q  19 cccttatgtctttccaattgatgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattata 118  Q
    |||||||||||||||||||||| | |||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||| ||||||||||| ||    
T  15090 cccttatgtctttccaattgatatctttccaactttttgcatctaagaaggacttgagcacattgttttcatcatctgaccatggtttaccaatattgta 14991  T
Q  119 tctaattttcggatcttgtctttccattttaaaaagtttccttg-ccttgtcccgaatcgctttcaaat 186  Q
    ||||||||||  ||||||||||||| ||||||||| |||||| | |||||||| ||||||| |||||||    
T  14990 tctaattttctaatcttgtctttcctttttaaaaaatttcctggcccttgtcctgaatcgcattcaaat 14922  T

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Target: scaffold0299; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 19 - 186
Target Start/End: Complemental strand, 20663 - 20495
Alignment:
Q  19 cccttatgtctttccaattgatgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattata 118  Q
    ||||||||||||||||||||||||  |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||||||||||| ||    
T  20663 cccttatgtctttccaattgatgtccttccaactttttgcatctaagaaggacttgagcgccttgttttcatcatctgaccatggtttaccaatattgta 20564  T
Q  119 tctaattttcggatcttgtctttccattttaaaaagtttccttg-ccttgtcccgaatcgctttcaaat 186  Q
    ||||||||||  ||||||||||||| ||||||||| |||||| | |||||||| ||||||| |||||||    
T  20563 tctaattttctaatcttgtctttcctttttaaaaaatttcctggcccttgtcctgaatcgcattcaaat 20495  T

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Target: scaffold0299; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 39 - 199
Target Start/End: Complemental strand, 20463 - 20303
Alignment:
Q  39 atgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattatatctaattttcggatcttgtc 138  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||| || |||||||| ||||||||||    
T  20463 atgtctttccaactttttgcatctaagaaggacttgagcgcattgttttcatcatctggccatggcttcccaatattgtaactaattttaggatcttgtc 20364  T
Q  139 tttccattttaaaaagtttccttgccttgtcccgaatcgctttcaaatcccaaccaaacaa 199  Q
    ||||| ||||||||| |||||| ||||||||  ||||||| |||||||||| |||||||||    
T  20363 tttcctttttaaaaaatttcctggccttgtcttgaatcgcattcaaatcccgaccaaacaa 20303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299; HSP #6
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 39 - 198
Target Start/End: Complemental strand, 14890 - 14731
Alignment:
Q  39 atgtttttccaactttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattatatctaattttcggatcttgtc 138  Q
    |||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||||||||| |||||||| ||||||||||||  ||||||||    
T  14890 atgtctttccaactttttgcatctaagaaggacttgagcgcattgttttcatcatctggccatggcttcccaatattgtatctaattttctaatcttgtc 14791  T
Q  139 tttccattttaaaaagtttccttgccttgtcccgaatcgctttcaaatcccaaccaaaca 198  Q
    ||||| ||||||||| |||||| ||||||||  |||| || |||||||||| ||||||||    
T  14790 tttcctttttaaaaaatttcctggccttgtcttgaattgcattcaaatcccgaccaaaca 14731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0299; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 14524 - 14443
Alignment:
Q  51 ctttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattatatctaattttcggat 132  Q
    ||||||| |||||||| |||||||||  ||||||||| ||| ||||||||  |||||||| |||| |||| |||||||||||    
T  14524 ctttttgtatctaagacggacttgagcacattgtttttatcatctgaccaatgcttaccagtattgtatccaattttcggat 14443  T

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Target: scaffold0299; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 132
Target Start/End: Complemental strand, 20082 - 20001
Alignment:
Q  51 ctttttgcatctaagaaggacttgagtgcattgttttcatcttctgaccatggcttaccaatattatatctaattttcggat 132  Q
    ||||||| |||||||| |||||||||  ||||||||||||| ||  ||||  |||||||| |||| |||| |||||| ||||    
T  20082 ctttttgtatctaagacggacttgagcacattgttttcatcatcgaaccaatgcttaccagtattgtatccaatttttggat 20001  T

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