View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12584_low_9 (Length: 228)

Name: NF12584_low_9
Description: NF12584
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12584_low_9
NF12584_low_9
[»] chr8 (1 HSPs)
chr8 (67-221)||(31471488-31471642)
[»] chr7 (2 HSPs)
chr7 (51-100)||(48551485-48551534)
chr7 (56-100)||(32141590-32141634)
[»] chr5 (1 HSPs)
chr5 (63-100)||(10950919-10950956)
[»] chr4 (1 HSPs)
chr4 (53-98)||(42725942-42725987)


Alignment Details
Target: chr8 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 67 - 221
Target Start/End: Complemental strand, 31471642 - 31471488
Alignment:
Q  67 taaaaggaaattaagggttaagatttggagtaagaatataggcttgcttactcttgaagtaaatatatccatcttcatgattgattttcttcattatatt 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  31471642 taaaaggaaattaagggttaagatttggagtaagaatataggcttgcttactcttgaagtaaatatatccatcttcatgattgatttccttcaatatatt 31471543  T
Q  167 gattatttgcttatttatcgtttcatgatatatatttcgcattcatctcactcga 221  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| | ||||||    
T  31471542 gattatttgcttatttatcgtttcataatatatatttcgcattcatttaactcga 31471488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 51 - 100
Target Start/End: Complemental strand, 48551534 - 48551485
Alignment:
Q  51 attagaaccattagattaaaaggaaattaagggttaagatttggagtaag 100  Q
    ||||||||| |||||||||||  ||||||||||||||||||| |||||||    
T  48551534 attagaaccgttagattaaaattaaattaagggttaagatttagagtaag 48551485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 100
Target Start/End: Original strand, 32141590 - 32141634
Alignment:
Q  56 aaccattagattaaaaggaaattaagggttaagatttggagtaag 100  Q
    |||||| |||||||||| ||||||| |||||||||||||||||||    
T  32141590 aaccatcagattaaaagaaaattaatggttaagatttggagtaag 32141634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 100
Target Start/End: Original strand, 10950919 - 10950956
Alignment:
Q  63 agattaaaaggaaattaagggttaagatttggagtaag 100  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  10950919 agattaaaagaaaattaatggttaagatttggagtaag 10950956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 53 - 98
Target Start/End: Complemental strand, 42725987 - 42725942
Alignment:
Q  53 tagaaccattagattaaaaggaaattaagggttaagatttggagta 98  Q
    ||||||| |||||||||||  |||||||||||| ||||||||||||    
T  42725987 tagaaccgttagattaaaattaaattaagggttgagatttggagta 42725942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University