View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12585_high_16 (Length: 234)
Name: NF12585_high_16
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 7e-76; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 13 - 213
Target Start/End: Complemental strand, 11582393 - 11582197
Alignment:
| Q |
13 |
caaaaatcacctccctaaacccatcgttttcttatattttcttacaaagtctaataagtgagatctatggaggaagaggcagatttgatcaacaatcttt |
112 |
Q |
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| T |
11582393 |
caaaaatcacctccccaaacccat----ttcttatattttcttacaaagtctaataagtgagttctatggaggaagaggcagatttgatcagcaatattt |
11582298 |
T |
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| Q |
113 |
cctgatgtatttctagcttttataatttcttttttgtcaggcgaggaagctgtgagaactagtgtactttccaattgttggaaaacattgtggatgtact |
212 |
Q |
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| T |
11582297 |
tctgatatacttttagcttttataatttcttttctgtgaggcgaggaagctgtgagaactagtgtactttccaattgttggaaaacattgtggatgtact |
11582198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 111 - 213
Target Start/End: Complemental strand, 11588617 - 11588515
Alignment:
| Q |
111 |
ttcctgatgtatttctagcttttataatttcttttttgtcaggcgaggaagctgtgagaactagtgtactttccaattgttggaaaacattgtggatgta |
210 |
Q |
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||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||| || || ||||| ||| |||||||||||||||||| ||| |
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| T |
11588617 |
ttcctgatgtacttctagcttttataatttcttttctgtcaggcgaggaagctgtgagaacaagcgtgctttcaaatcgttggaaaacattgtggaagta |
11588518 |
T |
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| Q |
211 |
ctc |
213 |
Q |
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||| |
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| T |
11588517 |
ctc |
11588515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Complemental strand, 11588724 - 11588690
Alignment:
| Q |
36 |
tcgttttcttatattttcttacaaagtctaataag |
70 |
Q |
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| T |
11588724 |
tcgttttcttataatttcttacaaagtctaataag |
11588690 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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