View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12585_high_17 (Length: 217)

Name: NF12585_high_17
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12585_high_17
NF12585_high_17
[»] chr4 (2 HSPs)
chr4 (18-201)||(24262133-24262316)
chr4 (64-172)||(38466132-38466241)
[»] chr7 (4 HSPs)
chr7 (33-118)||(1264361-1264447)
chr7 (33-118)||(48847491-48847577)
chr7 (33-118)||(14231637-14231723)
chr7 (33-173)||(26907043-26907184)
[»] chr5 (2 HSPs)
chr5 (33-118)||(30443171-30443257)
chr5 (18-76)||(43026860-43026918)
[»] chr1 (1 HSPs)
chr1 (33-118)||(25226407-25226493)
[»] chr6 (3 HSPs)
chr6 (33-118)||(21999640-21999726)
chr6 (33-118)||(31891758-31891844)
chr6 (19-100)||(4095773-4095855)
[»] chr8 (1 HSPs)
chr8 (33-118)||(8163563-8163649)
[»] chr3 (7 HSPs)
chr3 (33-118)||(17689099-17689182)
chr3 (33-118)||(37984510-37984596)
chr3 (27-118)||(24759258-24759350)
chr3 (33-103)||(31687310-31687381)
chr3 (33-118)||(53025169-53025255)
chr3 (27-118)||(24826664-24826756)
chr3 (27-118)||(33648617-33648709)


Alignment Details
Target: chr4 (Bit Score: 160; Significance: 2e-85; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 201
Target Start/End: Complemental strand, 24262316 - 24262133
Alignment:
Q  18 ctttgtaattatcaatcgagtaccattacacagacctgctgttgtgtccaaatttctcaaaacataacaggaacttcaactttcaatgttatcttgtgat 117  Q
    ||||||||||||||||| |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  24262316 ctttgtaattatcaatcaagtaccattacacaaacctgctgttatgtccaaatttctcaaaacataacaggaactccaactttcaatgttatcttgtgat 24262217  T
Q  118 tcgaaagactagttaaattaataatgtttagaaattttggtgtgtgtacatcatctcgcctcactttcttctataatatgccta 201  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24262216 tcgaaaaactagttaaattaataatgtttagaaattttggtgtgtgtacatcatctggcctcactttcttctataatatgccta 24262133  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 64 - 172
Target Start/End: Original strand, 38466132 - 38466241
Alignment:
Q  64 tccaaatttctcaa-aacataacaggaacttcaactttcaatgttatcttgtgattcgaaagactagttaaattaataatgtttagaaattttggtgtgt 162  Q
    |||||||||||||| ||||||| ||||||| ||||||||||   ||| |||||||| | |||||  |   ||||||||  ||| | ||||| ||||||||    
T  38466132 tccaaatttctcaacaacataataggaactccaactttcaaacatattttgtgatttggaagaccggaagaattaatagagttaaaaaattctggtgtgt 38466231  T
Q  163 gtacatcatc 172  Q
    ||||||||||    
T  38466232 gtacatcatc 38466241  T

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Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 1264447 - 1264361
Alignment:
Q  33 tcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| ||||||| ||||||| |||||||||| || |||||||||||    
T  1264447 tcgagtaccattacacaaacctgctgttatgtccaaatttctcaacaacataataggaactccaactttcaaagtaatcttgtgatt 1264361  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 48847491 - 48847577
Alignment:
Q  33 tcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| ||||||| ||||||| |||||||||| || |||||||||||    
T  48847491 tcgagtaccattacacaaacctgctgttatgtccaaatttctcaacaacataataggaactccaactttcaaagtaatcttgtgatt 48847577  T

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Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 14231723 - 14231637
Alignment:
Q  33 tcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| || |||| ||||||| |||||||||| || |||||||||||    
T  14231723 tcgagtaccattacacaaacctgctgttatgtccaaatttctcaacaatataataggaactccaactttcaaagtaatcttgtgatt 14231637  T

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Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 33 - 173
Target Start/End: Original strand, 26907043 - 26907184
Alignment:
Q  33 tcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaactttcaatgttatcttgtgattcgaaagactagtt 131  Q
    |||||||||||||||||  ||||||||| ||||||||||||| || | ||||| ||||||| ||||||||||  | ||||||||||| | |||||| | |    
T  26907043 tcgagtaccattacacaaccctgctgttatgtccaaatttctaaacagcataataggaactccaactttcaaaataatcttgtgattaggaagacttgat 26907142  T
Q  132 aaattaataatgtttagaaattttggtgtgtgtacatcatct 173  Q
     |||| ||| |||| |  |||| ||||||||| | |||||||    
T  26907143 gaattgatagtgttcaagaattctggtgtgtgaatatcatct 26907184  T

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Target: chr5 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 30443171 - 30443257
Alignment:
Q  33 tcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| ||||||| ||||||| |||||||||| || |||||||||||    
T  30443171 tcgagtaccattacacaaacctgctgttatgtccaaatttctcaacaacataataggaactccaactttcaaagtaatcttgtgatt 30443257  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 76
Target Start/End: Original strand, 43026860 - 43026918
Alignment:
Q  18 ctttgtaattatcaatcgagtaccattacacagacctgctgttgtgtccaaatttctca 76  Q
    ||||||||| ||||||| ||| |||||||| || ||||| |||| ||||||||||||||    
T  43026860 ctttgtaataatcaatctagttccattacaaaggcctgcagttgggtccaaatttctca 43026918  T

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Target: chr1 (Bit Score: 55; Significance: 9e-23; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 25226493 - 25226407
Alignment:
Q  33 tcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    ||||||||||||||||| |||||||||| |||||||||||||||| ||||||| ||||||| |||||||||| || |||||||||||    
T  25226493 tcgagtaccattacacaaacctgctgttatgtccaaatttctcaacaacataataggaactccaactttcaaagtaatcttgtgatt 25226407  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 21999640 - 21999726
Alignment:
Q  33 tcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    ||||||||||||||||| || ||||||| |||||||||||||||| ||||||| ||||||| |||||||||| || |||||||||||    
T  21999640 tcgagtaccattacacaaacatgctgttatgtccaaatttctcaacaacataataggaactccaactttcaaagtaatcttgtgatt 21999726  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 31891758 - 31891844
Alignment:
Q  33 tcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    ||||||||||||||||| ||||| |||| ||| |||||||||||| ||||||| | ||||| |||||||||| || |||||||||||    
T  31891758 tcgagtaccattacacaaacctgttgttatgttcaaatttctcaacaacataataagaactccaactttcaaagtaatcttgtgatt 31891844  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 19 - 100
Target Start/End: Complemental strand, 4095855 - 4095773
Alignment:
Q  19 tttgtaattatcaatcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaacttt 100  Q
    ||||||||||||||||  ||||||||||| || ||||| | |  ||||||||||||||| ||||| ||||| ||| |||||||    
T  4095855 tttgtaattatcaatcttgtaccattacataggcctgcggattggtccaaatttctcaataacatcacagggactccaacttt 4095773  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 8163649 - 8163563
Alignment:
Q  33 tcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    |||||||||||||||||  | || |||| |||||||||||||||| ||||||| ||||||| |||||||||| || |||||||||||    
T  8163649 tcgagtaccattacacaaccatgatgttatgtccaaatttctcaacaacataataggaactccaactttcaaagtaatcttgtgatt 8163563  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 17689182 - 17689099
Alignment:
Q  33 tcgagtaccattacacagacctgctgttgtgtccaaatttctcaaaacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    ||||||||||||||||| || || |||| ||||||||||||||  ||||||| ||||||| |||||||||| || |||||||||||    
T  17689182 tcgagtaccattacacaaacgtgttgttatgtccaaatttctc--aacataaaaggaactccaactttcaaagtaatcttgtgatt 17689099  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 33 - 118
Target Start/End: Complemental strand, 37984596 - 37984510
Alignment:
Q  33 tcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    ||||||||||||||||| || || | || |||||||||||||||| ||||||| ||||||| |||||||||| || |||||||||||    
T  37984596 tcgagtaccattacacaaacatgttattatgtccaaatttctcaacaacataataggaactccaactttcaaagtaatcttgtgatt 37984510  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 24759258 - 24759350
Alignment:
Q  27 tatcaatcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    ||||| |||||||||||||||||  ||| ||||| |||||||||||||||| ||||||| || |||| ||||||| || || |||||||||||    
T  24759258 tatcagtcgagtaccattacacaaccctactgttatgtccaaatttctcaacaacataatagtaactccaacttttaaagtaatcttgtgatt 24759350  T

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Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 33 - 103
Target Start/End: Complemental strand, 31687381 - 31687310
Alignment:
Q  33 tcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaactttcaa 103  Q
    ||||||||||||||||| ||| ||| || |||||||||||||||| ||||||| ||||||| ||||||||||    
T  31687381 tcgagtaccattacacaaaccagctattatgtccaaatttctcaacaacataataggaactccaactttcaa 31687310  T

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Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 33 - 118
Target Start/End: Original strand, 53025169 - 53025255
Alignment:
Q  33 tcgagtaccattacacagacctgctgttgtgtccaaatttctcaa-aacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    |||||||||||||||||  ||| ||||| |||||||||||||||| ||||||| || |||| ||||||| || || |||||||||||    
T  53025169 tcgagtaccattacacaaccctactgttatgtccaaatttctcaacaacataatagtaactccaacttttaaagtaatcttgtgatt 53025255  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 24826756 - 24826664
Alignment:
Q  27 tatcaatcgagtaccattacacagacctgctgttgtgtccaaatttctca-aaacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    ||||| |||||||||||||||||  ||| ||||| |||||||||||||||  ||||||| || |||| ||||||| || || |||||||||||    
T  24826756 tatcagtcgagtaccattacacaaccctactgttatgtccaaatttctcagcaacataatagtaactccaacttttaaagtaatcttgtgatt 24826664  T

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Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 33648617 - 33648709
Alignment:
Q  27 tatcaatcgagtaccattacacagacctgctgttgtgtccaaatttctca-aaacataacaggaacttcaactttcaatgttatcttgtgatt 118  Q
    ||||| |||||||||||||||||  ||| ||||| |||||||||||||||  ||||||| || |||| ||||||| || || |||||||||||    
T  33648617 tatcagtcgagtaccattacacaaccctactgttatgtccaaatttctcagcaacataatagtaactccaacttttaaagtaatcttgtgatt 33648709  T

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