View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12585_high_4 (Length: 423)
Name: NF12585_high_4
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 19 - 413
Target Start/End: Complemental strand, 47422641 - 47422247
Alignment:
| Q |
19 |
acttgagctagggttttgatctgctatcacattagaaaaaggtgtttttgattctagattgttagaaggattactagggttttgtgggtgcaattgtgta |
118 |
Q |
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| T |
47422641 |
acttgagctagggttttgatctgctatcacattagaaaaaggtgtttttgattctagattgttagaaggattattagggttttgtgggtgcaattgtgta |
47422542 |
T |
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| Q |
119 |
gaagaagaagaagaatatcccgtggctagatatttgttcaagaattcaatgatgttggcttgtctatcacttgcaatagcttgttgttcttgtaccatca |
218 |
Q |
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| T |
47422541 |
gaagaagaagaagaatatcctgtggctagatatttgttcaagaattcaatgatgttggcttgtctatcacttgcaatagcttgttgttcttgtaccatca |
47422442 |
T |
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| Q |
219 |
tgttcatcctttcaatctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttc |
318 |
Q |
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| T |
47422441 |
tgttcatcctttcaatctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttc |
47422342 |
T |
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| Q |
319 |
ttcttgttgtgctattattttgttaaccactgtctcacaaaaactcttcaacatttcaaatctatcacggcgcctcttcctctttttgtcctttg |
413 |
Q |
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| T |
47422341 |
ttcttgttgtgctattattttattaaccactgtctcacaaaaactcttcaacatttcaaatctatcacggcgcctcttcctctttttgttctttg |
47422247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 233 - 385
Target Start/End: Original strand, 36127974 - 36128126
Alignment:
| Q |
233 |
atctcttgttttttccatgtttcctctctatcaagcttttcttgatctcttttgagcatgtcttcaagtagcttattgtgtatttcttcttgttgtgcta |
332 |
Q |
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| T |
36127974 |
atctcttgtttcttccaagcttcttctctactaaacttctcttcatctcttttaaccatatcttcaataagcttgttgtgcatttcttcttgttgatcca |
36128073 |
T |
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| Q |
333 |
ttattttgttaaccactgtctcacaaaaactcttcaacatttcaaatctatca |
385 |
Q |
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| T |
36128074 |
tcattttctttacaacactctcacaaaaacccttaaacacttcaaatctatca |
36128126 |
T |
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