View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12585_high_5 (Length: 418)
Name: NF12585_high_5
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 18 - 404
Target Start/End: Complemental strand, 48869100 - 48868714
Alignment:
| Q |
18 |
accttaagtttcaaccggccaaagctcacgccaatccgaaccatgttcaaagaatgccaatttcttctgtagcctctcagcatccactgttttcttgctc |
117 |
Q |
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| T |
48869100 |
accttaagtttcaaccggccaaagctcatgccaatccgaaccatgttcaaagaatgccaatttcttctgtagcctctcagcatccactgttttcttgctc |
48869001 |
T |
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| Q |
118 |
tttacatggaaaaaggttcaatgacatttggtcaagcactatgcaattacctgaaacaaattcttaccttccacaaggtggtacttttaacagcactagc |
217 |
Q |
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| T |
48869000 |
tttacatggaaaaaggttcaatgacatttggtcaagcactatgcaattacctgaaacaaattcttaccttccagaaggtggtacttttaacagcactagc |
48868901 |
T |
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| Q |
218 |
aatgtgccatttcaaggttggaataaaaaccataataattatgtgattggtaattcaataggctcttctgcgactcctgttgtgaatgttgttgaacgag |
317 |
Q |
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| T |
48868900 |
aatgtgccatttcaaggttggaataaaaaccataataattatgtgattggtaattcaataggctcttctacgactcctgttgtgaatgttgttgaacgag |
48868801 |
T |
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| Q |
318 |
aagaagggccgtcaacgaaaccatatgaggcatatatgatgagcaacaagatggagtgtaaaagtagctgtatctctgatgatattt |
404 |
Q |
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| T |
48868800 |
aagaagggccgtcaacgaaaccatatgaggcatatatgatgagcaacaagatggagtgtaaaagtagctgtatctctgatgatattt |
48868714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 2906097 - 2906273
Alignment:
| Q |
20 |
cttaagtttcaaccggccaaagctcacgccaatccgaaccatgttcaaagaatgccaatttcttctgtagcctctcagcatccactgttttcttgctctt |
119 |
Q |
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| T |
2906097 |
cttaggtttcaatcggccatagctcgttccaatctgaatgatgttcaaagaatgccattttcttctgtagactctcaacattcacagttttctcatcctt |
2906196 |
T |
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| Q |
120 |
tacatggaaa---aaggttcaatgacatttggtcaagcactat---gcaattacctgaaacaaattcttaccttcca |
190 |
Q |
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| T |
2906197 |
tacttgaaaaaagaaggtgcaatgacatttggtcaagccctatgcagcaattaccagaaacaaactcttaccttcca |
2906273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 258 - 320
Target Start/End: Original strand, 2894864 - 2894926
Alignment:
| Q |
258 |
atgtgattggtaattcaataggctcttctgcgactcctgttgtgaatgttgttgaacgagaag |
320 |
Q |
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| T |
2894864 |
atgtgatcggcaattcaataggctcttctatgattcctggtatgaatgttgttgaacaagaag |
2894926 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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