View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12585_high_6 (Length: 374)
Name: NF12585_high_6
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_high_6 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 342; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 17 - 374
Target Start/End: Complemental strand, 46344747 - 46344390
Alignment:
| Q |
17 |
gggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttct |
116 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344747 |
gggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttct |
46344648 |
T |
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| Q |
117 |
ttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344647 |
ttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtt |
46344548 |
T |
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| Q |
217 |
tgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagaattctttagtgacactgttaaggcttatataatttgtggttagcag |
316 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
46344547 |
tgattgctttggcctttacagagtatgttaagggtacctcccttgtgtaatagatttctttagtgacactgttaaggcttatagaatttgtggttagcag |
46344448 |
T |
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| Q |
317 |
tcaatatatgaaactttttgtatacgaaactttttggcattctccttcctttattctc |
374 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344447 |
tcaatatatgaaactttttgtatacgaaactttttggcattctccttcctttattctc |
46344390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 46451809 - 46452067
Alignment:
| Q |
17 |
gggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttct |
116 |
Q |
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| T |
46451809 |
gggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttct |
46451908 |
T |
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| Q |
117 |
ttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46451909 |
ttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtt |
46452008 |
T |
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| Q |
217 |
tgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagaattct |
275 |
Q |
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| T |
46452009 |
tgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagatttct |
46452067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 17 - 275
Target Start/End: Original strand, 46462777 - 46463035
Alignment:
| Q |
17 |
gggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttct |
116 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462777 |
gggggtggaaatagcaaaaggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttct |
46462876 |
T |
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| Q |
117 |
ttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtt |
216 |
Q |
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| T |
46462877 |
ttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtt |
46462976 |
T |
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| Q |
217 |
tgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaatagaattct |
275 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
46462977 |
tgattgctttggcctttacagagtatgttaagggtacctcccttgtgtaatagatttct |
46463035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 46466199 - 46466448
Alignment:
| Q |
17 |
gggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttct |
116 |
Q |
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|||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||||||| |
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| T |
46466199 |
gggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttgcttct |
46466298 |
T |
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| Q |
117 |
ttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtt |
216 |
Q |
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||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || |||||||||||||||||||||||||||| |
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| T |
46466299 |
ttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgttgggtt |
46466398 |
T |
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| Q |
217 |
tgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaa |
266 |
Q |
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|||||||| ||||| ||||||| |||||||||||||| ||||||||||| |
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| T |
46466399 |
tgattgctctggctgttacagaatatgttaagggtactgcccttgtgtaa |
46466448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 146; E-Value: 8e-77
Query Start/End: Original strand, 17 - 266
Target Start/End: Original strand, 46471404 - 46471653
Alignment:
| Q |
17 |
gggggtggaaatagcaaatggacagggtttgtttgatcaaatatctggtggtggaattccatggttcttggggacaagtgtgttgttgtcacttgcttct |
116 |
Q |
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|||||||||| ||||||| || ||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||||||||||| || |||||||| |
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| T |
46471404 |
gggggtggaattagcaaaagggcagggtttgttcgatcaaatatctggtggtggaatcccatggttcttgtatacaagtgtgttgttgacagttgcttct |
46471503 |
T |
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| Q |
117 |
ttgattccatttttccaaggtgttagtgttgagtccaagtcaaaaggtgttatgtcttcagatgcagaactatggaatggaagaattgctatgttgggtt |
216 |
Q |
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||| ||||||| || ||||||||||||||||||| |||||||||||| | ||||| ||| ||||||| || |||||||||||||||||||||||||||| |
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| T |
46471504 |
ttggttccattatttgaaggtgttagtgttgagtctaagtcaaaaggtatcatgtcctcaaatgcagagctttggaatggaagaattgctatgttgggtt |
46471603 |
T |
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| Q |
217 |
tgattgctttggcttttacagagtatgttaagggtacctcccttgtgtaa |
266 |
Q |
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|||||||| ||||| ||||||| |||||||||||||| ||||||||||| |
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| T |
46471604 |
tgattgctctggctgttacagaatatgttaagggtactgcccttgtgtaa |
46471653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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