View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12585_high_7 (Length: 310)
Name: NF12585_high_7
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_high_7 |
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Alignment Details
Target: chr6 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 94 - 293
Target Start/End: Complemental strand, 8238448 - 8238258
Alignment:
| Q |
94 |
ttgtatggatatatagaagaaaaataaaagggctcattcatctattaaccgtggttttatttgttatttcatttatgttgacattggaaagttttctctg |
193 |
Q |
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| T |
8238448 |
ttgtatggatatatagaagaaaaatgaaagggctcattcatctattaaccgtggttatatttgttatttcatttatgttgacattggacagttttttctg |
8238349 |
T |
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| Q |
194 |
gttgtatggattgtattagatttggattcaattgaattagaattgacaatcatgtgttgcagacgacatggaaggaggacaaagaagagaaggaagaaag |
293 |
Q |
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| T |
8238348 |
gttgtatcgattgtattggatttggattcaattgaattggaattgacaatcatgtgt---------catggaaggaggacaaagaagagaaggaagaaag |
8238258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 97
Target Start/End: Complemental strand, 8240064 - 8239985
Alignment:
| Q |
18 |
agagactagaagctatatatgaaaatgtcaaggatgtggaagatatgggaattttggaagagatcaaagaggagctttgt |
97 |
Q |
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| T |
8240064 |
agagactagaagctatatatgaaaatgtcaaggatgtggaagatatgggaattttggaagagatcaaagaggagctttgt |
8239985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 160 - 293
Target Start/End: Complemental strand, 34837073 - 34836939
Alignment:
| Q |
160 |
tttcatttatgttgacattggaaagttttctctggtt-gtatggattgtattagatttggattcaattgaattagaattgacaatcatgtgttgcagacg |
258 |
Q |
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| T |
34837073 |
tttcatttatgttgacattggaaagttttctctggtttgtatggattgtattggatttggattcaattgaattggaattgacaatcatgtgttgcagacg |
34836974 |
T |
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| Q |
259 |
acatggaaggaggacaaagaagagaaggaagaaag |
293 |
Q |
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| T |
34836973 |
acatggaaggaggacaaagaagagaagaaagaaag |
34836939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 94 - 168
Target Start/End: Complemental strand, 34837546 - 34837472
Alignment:
| Q |
94 |
ttgtatggatatatagaagaaaaataaaagggctcattcatctattaaccgtggttttatttgttatttcattta |
168 |
Q |
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| T |
34837546 |
ttgtatggatatatagaagaaaaatgaaaggactcattcatctattaactgtggttttatttgttatttcattta |
34837472 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 111; Significance: 5e-56; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 171 - 293
Target Start/End: Complemental strand, 28966086 - 28965964
Alignment:
| Q |
171 |
ttgacattggaaagttttctctggttgtatggattgtattagatttggattcaattgaattagaattgacaatcatgtgttgcagacgacatggaaggag |
270 |
Q |
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| T |
28966086 |
ttgacattggaaagttttctctggttgtatggattgtattggatttggattcaattgaattggaattgacaatcatgtgttgcagacgacatggaaggag |
28965987 |
T |
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| Q |
271 |
gacaaagaagagaaggaagaaag |
293 |
Q |
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| T |
28965986 |
gacaaagaagagaagaaagaaag |
28965964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 94 - 142
Target Start/End: Complemental strand, 28966137 - 28966089
Alignment:
| Q |
94 |
ttgtatggatatatagaagaaaaataaaagggctcattcatctattaac |
142 |
Q |
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| T |
28966137 |
ttgtatggatatatagaagaaaaatgaaaggtctcattcatctattaac |
28966089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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