View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12585_low_1 (Length: 466)
Name: NF12585_low_1
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 406; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 406; E-Value: 0
Query Start/End: Original strand, 10 - 455
Target Start/End: Original strand, 42741572 - 42742016
Alignment:
| Q |
10 |
aaaggcatttggattaagatattacatacnnnnnnnnctttcacgagaatttttacatcaccaccaaatgagacattaattgtcacttactgattcatca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42741572 |
aaaggcatttggattaagatattacatactttttt--ctttcatgagaatttttacatcaccaccaaatgagacattaattgtcacttactgattcatca |
42741669 |
T |
|
| Q |
110 |
agatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttcctt-aacttcattacttccacatgct |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
42741670 |
agatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttcctttaacttcattacttccacatgct |
42741769 |
T |
|
| Q |
209 |
agcaacattgtttcaaaacttctcatcattttcttctgcatagttagtctcctccccaagcctattcttgtcaaacctaacttctaataattgtagcttt |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42741770 |
agcaacattgtttcaaaacttctcatcattttcttctgcatagttagtctcctccccaagcctattcttgtcaaacctaacttctaataattgtagcttt |
42741869 |
T |
|
| Q |
309 |
gagtgttagatttggcataccttgaggttgagtatccttttccacgtcatgttattgaagtttctcctttctcattactgctgctagtgaaatccgaacc |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42741870 |
gagtgttagatttggcataccttgaggttgagtatccttttccacgtcatgttattgaagtttctcctttctcattactgctgctagtgaaatccgaacc |
42741969 |
T |
|
| Q |
409 |
tctccaccattgactgacactcccaaattgtcttcaaccgcattctt |
455 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42741970 |
tctccaccattgactgacactcccaaattgtcttcaaccgcattctt |
42742016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 21745696 - 21745918
Alignment:
| Q |
10 |
aaaggcatttggattaagatattacatacnnnnnnnnctttcacgagaatttttacatcaccaccaaatgagacattaattgtcacttactgattcatca |
109 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
21745696 |
aaaggcatttggattaagatattacatactttttt--ctttcatgagaatttttacatcaccaccaaatgagacatt----gtcacttactgattcatca |
21745789 |
T |
|
| Q |
110 |
agatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttccttaacttcattacttccacatgcta |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21745790 |
agatccaagaatatatatgctcatttgttcgcacatatggttgcttgcaccattgttaaggtaccatgaatttccttaacttcattacttccacatgcta |
21745889 |
T |
|
| Q |
210 |
gcaacattgtttcaaaacttctcatcatt |
238 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
21745890 |
gcaacattgtttcaaaacttctcatcatt |
21745918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 189 - 225
Target Start/End: Original strand, 4890685 - 4890721
Alignment:
| Q |
189 |
cttcattacttccacatgctagcaacattgtttcaaa |
225 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| |
|
|
| T |
4890685 |
cttcattacttccacgtgctagcagcattgtttcaaa |
4890721 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University