View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12585_low_12 (Length: 289)
Name: NF12585_low_12
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_low_12 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 17 - 273
Target Start/End: Original strand, 6359062 - 6359318
Alignment:
| Q |
17 |
gatccatgtacaaatgaaattgatttacagtttatgtcgatgaagtcagatccttgagtatatgcagattatcaagaagctatatccatatataaaagga |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6359062 |
gatccatgtacaaatgaaattgatttacagtttatgtcgatgaagtcagatccttgagtatatgcagattatcaagaagctatatccatatataaaagga |
6359161 |
T |
|
| Q |
117 |
ttgagaaactgcaaatcaattgatgcaaacacgagagacattttgaatttaagctcgtccttgtaattctctctatctactactgttattatttcgttat |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6359162 |
ttgagaaactgcaaatcaattgatgcaaacacgagagacgttttgaatttaagctcgtccttgtaattctctctatttactactgttattatttcgttat |
6359261 |
T |
|
| Q |
217 |
taaatatattgtttgataccttcaagctttacagaaatctcgatccaataacctaat |
273 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
6359262 |
taaatatattgtttgataccttcaagcattacagaaatctcgatccaataacctaat |
6359318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 23 - 131
Target Start/End: Complemental strand, 32857393 - 32857285
Alignment:
| Q |
23 |
tgtacaaatgaaattgatttacagtttatgtcgatgaagtcagatccttgagtatatgcagattatcaagaagctatatccatatataaaaggattgaga |
122 |
Q |
| |
|
|||||||||||||||||||| | |||||| || ||||||||| |||||||| |||||| ||||| ||| |||||||| ||||| |||||| |||||||| |
|
|
| T |
32857393 |
tgtacaaatgaaattgatttgctgtttatatccatgaagtcaaatccttgactatatgtagattctcatgaagctatttccatccataaaatgattgaga |
32857294 |
T |
|
| Q |
123 |
aactgcaaa |
131 |
Q |
| |
|
||||||||| |
|
|
| T |
32857293 |
aactgcaaa |
32857285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University