View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12585_low_13 (Length: 285)
Name: NF12585_low_13
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 3 - 285
Target Start/End: Original strand, 40039806 - 40040088
Alignment:
| Q |
3 |
agtggtgtccaccgtcgggaatcaacggcgttagcgtttcctccgattgaaacgaaaaactcaattatactcacgtgaccttcactcgccgccacgtgaa |
102 |
Q |
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| T |
40039806 |
agtggtgtccaccgtcgggaatcaacggcgttagcgtttcctccgattgaaacaaaaaactcaattaaactcacgtgaccttcactcgccgatacgtgaa |
40039905 |
T |
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| Q |
103 |
tcggtgtcatcatttctctgttcaccgaattcacatccaattcgtcgcagaaagattcaaacaaaaactttacaacatcgactctatctattgttgcagc |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40039906 |
tcggtgtcatcatttctctgttcaccgaattcacatccaattcgtcgcagaaagattcaaacaaaaactttacaacatcgactctatctattattgcagc |
40040005 |
T |
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| Q |
203 |
ttcatgtaaaacaaaatccactgaatcgttgattctgcatccgttagctacaagaagcttcaaaacatcgagtttcccagttc |
285 |
Q |
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| T |
40040006 |
ttcatgcaaaacaaaatccactgaatcgttgattctgcatccgttagctacaagaagcttcaaaacagcgagtttcccagttc |
40040088 |
T |
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Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 125 - 280
Target Start/End: Complemental strand, 19620215 - 19620060
Alignment:
| Q |
125 |
caccgaattcacatccaattcgtcgcagaaagattcaaacaaaaactttacaacatcgactctatctattgttgcagcttcatgtaaaacaaaatccact |
224 |
Q |
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||||||||||||||||||||| | || ||||||||| |||||||||||||||||||||| | |||| ||||||||||||| |||||||||||||||||| |
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| T |
19620215 |
caccgaattcacatccaattcattgctgaaagattccaacaaaaactttacaacatcgattatatccattgttgcagctttgtgtaaaacaaaatccact |
19620116 |
T |
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| Q |
225 |
gaatcgttgattctgcatccgttagctacaagaagcttcaaaacatcgagtttccc |
280 |
Q |
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| T |
19620115 |
gaatcgttaattctgcatccattagctacaagaagcttcaaaacatcgagtttccc |
19620060 |
T |
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