View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12585_low_14 (Length: 277)
Name: NF12585_low_14
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-129; HSPs: 8)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 32895852 - 32895604
Alignment:
| Q |
16 |
catagtagaatgtatatcaacaaaccaccaacaacaattccctgtcatttgatatataatgttagaattttaagatttggcagtacatttttataaattc |
115 |
Q |
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| T |
32895852 |
catagtagaatgtatatcaacaaaccaccaacaacaattccctgtcatttgatatataatgttagaattttaagatttggcagtacatttttataaattc |
32895753 |
T |
|
| Q |
116 |
attgtagttgctatgacacttaaccccatatattgtggaccacaagtcaatgttgagtcctataatccatgctgaaggattatcatgttctgctatcatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
32895752 |
attgtagttgctatgacacttaaccccatatattgtggaccacaagtcaatgttgaatcctataatccatgccgaaggattatcatgttctgctatcatt |
32895653 |
T |
|
| Q |
216 |
gtgaaaacagctgattgtgctgctccaataaagcacatccatgcagtga |
264 |
Q |
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|||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
32895652 |
gtgaaaacagctgattgtactgctccaataaagcacatcaatgcagtga |
32895604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 264
Target Start/End: Complemental strand, 32952890 - 32952633
Alignment:
| Q |
16 |
catagtagaatgtatatcaacaaaccaccaacaacaattccctgtcatt---------tgatatataatgttagaattttaagatttggcagtacatttt |
106 |
Q |
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|||||||||||||| |||| || ||| ||||||||||||||||||||| ||||| |||||||||||| ||||||||||| || | ||| |
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| T |
32952890 |
catagtagaatgtacgtcaaaaatccagcaacaacaattccctgtcattgatgatgattgatacataatgttagaactttaagatttgagagaaatttta |
32952791 |
T |
|
| Q |
107 |
tataaattcattgtagttgctatgacacttaaccccatatattgtggaccacaagtcaatgttgagtcctataatccatgctgaaggattatcatgttct |
206 |
Q |
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||||||||||||||| ||| ||||| ||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| |||| | ||||| |
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| T |
32952790 |
tataaattcattgtatttgttatgatacttaaccccatataatatggaccacaagtcaatgttgaatcctataatccatgctgaagggttattacgttct |
32952691 |
T |
|
| Q |
207 |
gctatcattgtgaaaacagctgattgtgctgctccaataaagcacatccatgcagtga |
264 |
Q |
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||||| | ||||||||||||||||||| |||||| |||||||||||||||| ||||| |
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| T |
32952690 |
gctattactgtgaaaacagctgattgtattgctcccataaagcacatccatgtagtga |
32952633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 115 - 264
Target Start/End: Complemental strand, 32935400 - 32935251
Alignment:
| Q |
115 |
cattgtagttgctatgacacttaaccccatatattgtggaccacaagtcaatgttgagtcctataatccatgctgaaggattatcatgttctgctatcat |
214 |
Q |
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||||||| |||||| || ||||||||||||||| | ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| || |
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| T |
32935400 |
cattgtacttgctaagatacttaaccccatataatatggaccacaagtcaatgttgaatcctataatccatgctgaagggttatcatgttctactattat |
32935301 |
T |
|
| Q |
215 |
tgtgaaaacagctgattgtgctgctccaataaagcacatccatgcagtga |
264 |
Q |
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||||||||||||||||||| ||||||| |||||||||||||||| ||||| |
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| T |
32935300 |
tgtgaaaacagctgattgtactgctcccataaagcacatccatgtagtga |
32935251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 136 - 258
Target Start/End: Original strand, 19504005 - 19504127
Alignment:
| Q |
136 |
taaccccatatattgtggaccacaagtcaatgttgagtcctataatccatgctgaaggattatcatgttctgctatcattgtgaaaacagctgattgtgc |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||| |||||||||||||| |||||||| |||||||||||| |
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| T |
19504005 |
taaccccatatattgtggaccacaagtcaatattgagccctataatccatgctgaagggttattatgttctgctatcactgtgaaaatagctgattgtgc |
19504104 |
T |
|
| Q |
236 |
tgctccaataaagcacatccatg |
258 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
19504105 |
tgctccaataaagcacatccatg |
19504127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 136 - 264
Target Start/End: Complemental strand, 32919125 - 32918997
Alignment:
| Q |
136 |
taaccccatatattgtggaccacaagtcaatgttgagtcctataatccatgctgaaggattatcatgttctgctatcattgtgaaaacagctgattgtgc |
235 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||| |||| |||||||||| ||||||||||| |
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| T |
32919125 |
taaccccatatattatggaccacaagtcaatgttgaatcctataatccatgctgaagggttattatgttctactattattgtgaaaatggctgattgtgc |
32919026 |
T |
|
| Q |
236 |
tgctccaataaagcacatccatgcagtga |
264 |
Q |
| |
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|||||| |||||||||||||||| ||||| |
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| T |
32919025 |
tgctcccataaagcacatccatgtagtga |
32918997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 136 - 264
Target Start/End: Complemental strand, 32882149 - 32882021
Alignment:
| Q |
136 |
taaccccatatattgtggaccacaagtcaatgttgagtcctataatccatgctgaaggattatcatgttctgctatcattgtgaaaacagctgattgtgc |
235 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| | |||||||| ||||||||||| |
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| T |
32882149 |
taacccaatatattatggaccacaagtcaatgttgagtcctataatccatgctgaagggttattttgttctactattactgtgaaaattgctgattgtgc |
32882050 |
T |
|
| Q |
236 |
tgctccaataaagcacatccatgcagtga |
264 |
Q |
| |
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|||||| |||||||||||||||| ||||| |
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| T |
32882049 |
tgctcccataaagcacatccatgaagtga |
32882021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 32885021 - 32884890
Alignment:
| Q |
133 |
acttaaccccatatattgtggaccacaagtcaatgttgagtcctataatccatgctgaaggattatcatgttctgctatcattgtgaaaacagctgattg |
232 |
Q |
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|
||||||| ||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| ||||||| |||| | |||||||||||||||||| |
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| T |
32885021 |
acttaactccatatattatggaccacaagtcaatgttgagtcctataatccaagctgaagtgttattatgttctactattaatgtgaaaacagctgattg |
32884922 |
T |
|
| Q |
233 |
tgctgctccaataaagcacatccatgcagtga |
264 |
Q |
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| |||||| |||||||||||||||| ||||| |
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| T |
32884921 |
tattgctcccataaagcacatccatgtagtga |
32884890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 32919252 - 32919204
Alignment:
| Q |
16 |
catagtagaatgtatatcaacaaaccaccaacaacaattccctgtcatt |
64 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||||||||||| ||||| |
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|
| T |
32919252 |
catagttgaatgtagatcaacaaaccaccagcaacaattccctatcatt |
32919204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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