View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12585_low_17 (Length: 243)
Name: NF12585_low_17
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_low_17 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 32895492 - 32895268
Alignment:
| Q |
19 |
aattagtcatgagtttagatgataacctgcataatgtaccagatggacaatgtgacacaacatgtaacagtaagaattgaacccttcaacccagtctcat |
118 |
Q |
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| T |
32895492 |
aattagtcatgagtttagatgataacctgcataatgtaccagatggacaatgtgacacaacatgtaacagtaagaattgaacccttcaacccagtctcat |
32895393 |
T |
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| Q |
119 |
tgataggagcactttttggttgaatatggattagtggaccccacaaatttctcattgtaggtcctttgtatagtgtcatggtagtaacaccagctaagga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
32895392 |
tgataggagcactttttggttgaatatggattagtggaccccacaaatttctcattgtaggtcctttgtatagtgtcatggtcgtaacaccagctaagga |
32895293 |
T |
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| Q |
219 |
tatcaaggtcccaagtacctttgct |
243 |
Q |
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|||||||||||||||||| |||||| |
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| T |
32895292 |
tatcaaggtcccaagtacttttgct |
32895268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 22 - 243
Target Start/End: Complemental strand, 32934901 - 32934680
Alignment:
| Q |
22 |
tagtcatgagtttagatgataacctgcataatgtaccagatggacaatgtgacacaacatgtaacagtaagaattgaacccttcaacccagtctcattga |
121 |
Q |
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| T |
32934901 |
tagtcatgagttaagatgagaacctgcataatgtagcctatagaagttgtgacacaacatgaaattgtaacaagtgaaccctttaaccaactctcatggg |
32934802 |
T |
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| Q |
122 |
taggagcactttttggttgaatatggattagtggaccccacaaatttctcattgtaggtcctttgtatagtgtcatggtagtaacaccagctaaggatat |
221 |
Q |
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| T |
32934801 |
tagaagcacttttctgttgaatatggattagaggaccccacaaatttctcattataggtcctttgtatagtgtcatggtcataacaccagctaaggagat |
32934702 |
T |
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| Q |
222 |
caaggtcccaagtacctttgct |
243 |
Q |
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| T |
32934701 |
caaggtcccaagtacttttgct |
32934680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 32951286 - 32951062
Alignment:
| Q |
19 |
aattagtcatgagtttagatgataacctgcataatgtaccagatggacaatgtgacacaacatgtaacagtaagaattgaacccttcaacccagtctcat |
118 |
Q |
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||||||||||||||| | || |||||||||||||||| | || || | |||||||||| ||||||| ||||||| ||||||||| | || | ||| || |
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| T |
32951286 |
aattagtcatgagttaaagtgcaaacctgcataatgtacgatatagaaattgtgacacaaaatgtaaccgtaagaagtgaaccctttatccaactcttat |
32951187 |
T |
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| Q |
119 |
tgataggagcactttttggttgaatatggattagtggaccccacaaatttctcattgtaggtcctttgtatagtgtcatggtagtaacaccagctaagga |
218 |
Q |
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| T |
32951186 |
tgatagaagcactttttggttgaatatggattagaggttcccacaaatttctcattaaaggacctttgtatagtgtcatggtcataacaccagctaagga |
32951087 |
T |
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| Q |
219 |
tatcaaggtcccaagtacctttgct |
243 |
Q |
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| T |
32951086 |
gatcaaggtcccaagtacttttgct |
32951062 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 38 - 242
Target Start/End: Complemental strand, 32918811 - 32918607
Alignment:
| Q |
38 |
tgataacctgcataatgtaccagatggacaatgtgacacaacatgtaacagtaagaattgaacccttcaacccagtctcattgataggagcactttttgg |
137 |
Q |
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|||| ||||||||||||||||| || || || |||||||| ||| ||| |||| || ||||||||| |||||| ||||| | | || |||||||||||| |
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| T |
32918811 |
tgattacctgcataatgtaccatatagaaaacgtgacacagcataaaactgtaataagtgaaccctttaacccactctcactaacagaagcactttttgg |
32918712 |
T |
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| Q |
138 |
ttgaatatggattagtggaccccacaaatttctcattgtaggtcctttgtatagtgtcatggtagtaacaccagctaaggatatcaaggtcccaagtacc |
237 |
Q |
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| T |
32918711 |
ttgaatatggattagaggactccacaaatttctcataataggtcccttgtatagtgtcatggtcataacaccagttaaggatgtcaaggtcccaagtact |
32918612 |
T |
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| Q |
238 |
tttgc |
242 |
Q |
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||||| |
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| T |
32918611 |
tttgc |
32918607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 42 - 235
Target Start/End: Complemental strand, 32884769 - 32884573
Alignment:
| Q |
42 |
aacctgcataatgtaccagatggacaatgtgacacaacatgtaacagtaagaattgaacccttcaacccagtctcattgataggagcactttttggttga |
141 |
Q |
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|||||||||||||||||| || || || ||| ||||||||| | |||||||| ||||||||| || ||| |||| ||||||| || ||||||| ||||| |
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| T |
32884769 |
aacctgcataatgtaccatatagaaaaagtggcacaacatgagatagtaagaagtgaaccctttaatccactctcgttgatagaagaactttttcgttga |
32884670 |
T |
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| Q |
142 |
ata---tggattagtggaccccacaaatttctcattgtaggtcctttgtatagtgtcatggtagtaacaccagctaaggatatcaaggtcccaagta |
235 |
Q |
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| T |
32884669 |
ataatatgaattagaggatgccacaagtttctcataacaggtcctttgtatagtgtcatggtcaaaacaccagctaaggatatcaaggtccccagta |
32884573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 241
Target Start/End: Original strand, 19504656 - 19504720
Alignment:
| Q |
177 |
aggtcctttgtatagtgtcatggtagtaacaccagctaaggatatcaaggtcccaagtacctttg |
241 |
Q |
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| T |
19504656 |
aggtcctttatatagtgtcatggtcataacaccggctaaggagattaaggtaccaaggacctttg |
19504720 |
T |
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