View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12585_low_3 (Length: 444)
Name: NF12585_low_3
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 19 - 429
Target Start/End: Original strand, 5328385 - 5328795
Alignment:
| Q |
19 |
actgggctgtcccttttatccattcacgagcatccttcagaagttgttcgtgcttttgctcgaagagttcccttgcagtttggttgttgtcgtttttgtg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5328385 |
actgggctgtcccttttatccattcacgagcatccttcagaagttgttcgtgcttttgctcgaagagttcccttgcagtttggttgttgtcgtttttgtg |
5328484 |
T |
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| Q |
119 |
aatgatgtaatgataaggaagtttcttctctatgcgctatttgtgtgcacaacaatgtgtatagacagatagtaatgagaattaggctagtgttattctc |
218 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
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| T |
5328485 |
aatgacgtaatgataaggaagtttcttctctatgcgctatttgtgtgcacaacaatgtatatagacggatagtaatgagaattaggctagtgttattctc |
5328584 |
T |
|
| Q |
219 |
aaaataaaacattgtatactcatatagtaaagagaatgaggttagtgtaactaggaattgactactagagtgattgaaatctcatgtttatttttcttgt |
318 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
5328585 |
aaaataaaacattgtatacacatatagtaaagagaatgaggttggtgtaactaggaattgactacaagagtgattgaaatcacatgtttatttttcttgt |
5328684 |
T |
|
| Q |
319 |
tcttctaataaaaacaacaaatcctcaaaagaattatcaagagttatgtttcccccaatttaaattttctgctgtaagaggttttacacattcgcactgt |
418 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
5328685 |
tcttctaataaaaacaacaaatcctcaaaataattatcaagtgttatgtttcctccaatttaaattttctgctgtaagagattttacacattcgcactgt |
5328784 |
T |
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| Q |
419 |
tagtaactcag |
429 |
Q |
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| T |
5328785 |
tagtaactcag |
5328795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 19 - 213
Target Start/End: Complemental strand, 5317226 - 5317033
Alignment:
| Q |
19 |
actgggctgtcccttttatccattcacgagcatccttcagaagttgttcgtgcttttgctcgaagagttcccttgcagtttggttgttgtcgtttttgtg |
118 |
Q |
| |
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|||| |||||| |||| |||||||| |||||||||||||| |||||||| || |||| ||||||||||||||| |||||||||||||||| ||| ||||| |
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| T |
5317226 |
actgagctgtctctttgatccattcgcgagcatccttcagcagttgttcatgtttttcctcgaagagttccctagcagtttggttgttgttgttcttgtg |
5317127 |
T |
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| Q |
119 |
aatgatgtaatgataaggaagtttcttctctatgcgctatt--tgtgtgcacaacaatgtgtatagacagatagtaatgagaattaggctagtgtta |
213 |
Q |
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||||| ||||||||||||||| ||||||||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| |||||||| |
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| T |
5317126 |
aatgacataatgataaggaagtcgcttctctatgcgctatttatgtgtgcacaaca---tgtatagatagatagtaatgagaattagattagtgtta |
5317033 |
T |
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