View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12585_low_4 (Length: 434)
Name: NF12585_low_4
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 14 - 428
Target Start/End: Original strand, 42688111 - 42688525
Alignment:
| Q |
14 |
gaagagtttgcaagagaaatgcttgctggtgtaaatccttgcatgattcgtggtcttaaagtaagttcgagtatttattgctaaacattttgaataatct |
113 |
Q |
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| T |
42688111 |
gaagagtttgcaagagaaatgcttgctggtgtaaatccttgcatgattcgtggtcttaaagtaagttcgagtatttattgctaaacattttgtataatct |
42688210 |
T |
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| Q |
114 |
aattattttgattgatatcagtgttaaatttgtttattgatgtatattcataataaaatgaatgtctatggtataatatagagtcacgtattatcatatt |
213 |
Q |
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| T |
42688211 |
aattattttgattgatatcagtgttaaatttgtttattgatgtatattcataataaaatgaatgtctatggtataatatagagtcatgtattatcatatt |
42688310 |
T |
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| Q |
214 |
tcttcatgatatttatttttaatgaatggtaggagtttcctccaaaaagcaatcttgatcccacagtatatggtgatcaaactagtaagataactgcaga |
313 |
Q |
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| T |
42688311 |
tcttcatgatatttatttttaatgaatggtaggagtttcctccaaaaagcaatcttgatcccacagtatatggtgatcaaactagtaagataactgcaga |
42688410 |
T |
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| Q |
314 |
tgcattggaacttgatgggagcacagtagacgaggtaaaatcattttaatcttaattaaaaagtactagtatgattttaatcttgcattgtaaattcaaa |
413 |
Q |
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| T |
42688411 |
tgcattggaacttgatgggagcacagtagacgaggtaaaatcattttaatcttaattaaaaagtactagtatgattttaatcttgcattgtaaattcaaa |
42688510 |
T |
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| Q |
414 |
tgaccatgtttttgg |
428 |
Q |
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| T |
42688511 |
tgaccatgtttttgg |
42688525 |
T |
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Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 250 - 348
Target Start/End: Complemental strand, 21848394 - 21848296
Alignment:
| Q |
250 |
ttcctccaaaaagcaatcttgatcccacagtatatggtgatcaaactagtaagataactgcagatgcattggaacttgatgggagcacagtagacgagg |
348 |
Q |
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||||||||||||||||||| || |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||| ||| |||| |
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| T |
21848394 |
ttcctccaaaaagcaatctagaacccacaatatatagtgatcaaactagtaagataactccagatgcattggaacttgatgggtgcacagcagatgagg |
21848296 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 14 - 51
Target Start/End: Original strand, 36744679 - 36744716
Alignment:
| Q |
14 |
gaagagtttgcaagagaaatgcttgctggtgtaaatcc |
51 |
Q |
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| T |
36744679 |
gaagaatttgcaagagaaatgcttgctggtgtaaatcc |
36744716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 66
Target Start/End: Complemental strand, 46710921 - 46710869
Alignment:
| Q |
14 |
gaagagtttgcaagagaaatgcttgctggtgtaaatccttgcatgattcgtgg |
66 |
Q |
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||||| ||||| ||||||||||| ||||||||||||||| ||| |||||||| |
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| T |
46710921 |
gaagaatttgctagagaaatgctggctggtgtaaatcctgtcataattcgtgg |
46710869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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