View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12585_low_7 (Length: 400)
Name: NF12585_low_7
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_low_7 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 315; Significance: 1e-177; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 315; E-Value: 1e-177
Query Start/End: Original strand, 13 - 385
Target Start/End: Original strand, 6806621 - 6806990
Alignment:
| Q |
13 |
cactgtatggttgaaaagagataatagaaaatttactcctgtgactaagtgcaattagagttgtttgtttcttcactcaactttcttgacgtttattttt |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
6806621 |
cactgtatggttgaaaagagataatagaaaatttactcctgtgactaagtgcaattagagttgtttgtttcttcactcaactttcttgacgttta--ttt |
6806718 |
T |
|
| Q |
113 |
agtttagaccacttgtagatttttcctggcccacgtccagacaatttttttaatgtatatttgtcacggagaataatgtgaaatgnnnnnnnnnnccctc |
212 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
6806719 |
agtttagaccacttgtagatttttcctggtccacgtccagacaatttttttaatgtatatttgtcacggagaataatgtgaaatg-tttttttttccctc |
6806817 |
T |
|
| Q |
213 |
ttttctttctgttattttgctccattctgcaattcttttgtaacaattgaattgtggtgctaataataataagagcaagtaatactatcccagtattagc |
312 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6806818 |
ttttctttcggttattttgctccattctgcaattcttttgtaacaattgaattgtggtgctaataataataagagcaagtaatactatcccagtattagc |
6806917 |
T |
|
| Q |
313 |
tgtggacctgggtagcgcttctgcaattaagtaaaaatagtacgatgaatcggaggtatcctatgtgatgtgt |
385 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6806918 |
tgtggacctgggtagtgcttctgcaattaagtaaaaatagtacgatgaatcggaggtatcctatgtgatgtgt |
6806990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University