View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12585_low_9 (Length: 365)
Name: NF12585_low_9
Description: NF12585
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12585_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 134; Significance: 1e-69; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 194 - 357
Target Start/End: Original strand, 52513393 - 52513562
Alignment:
| Q |
194 |
aaagtatccttgaaaaggaagtaagagaatgatgagtatttgtatttcaatttcatatatttcaattcatatac-----ccataccataccatacctttc |
288 |
Q |
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| T |
52513393 |
aaagtatccttgaaaaggaagtaagagaatgatgagtatttgtatttcaatttcatatatttcaattcatatacccataccataccataccatacctttc |
52513492 |
T |
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| Q |
289 |
tctctctcacttttaataattatttaatttcctttcaggcct-cccacactttattcatcccttcttctc |
357 |
Q |
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| T |
52513493 |
tctctctcacttttaataattatttagtttcctttcaggcctccccacactttattcatccctttttctc |
52513562 |
T |
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Target: chr3; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 133
Target Start/End: Original strand, 52513200 - 52513332
Alignment:
| Q |
1 |
agaggatcaagctaaaggtgttgggtgaaaatcccaagatgagtattatctagcaataaggtatagaagtgaatggaatctctagtacagtattgaaagg |
100 |
Q |
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| T |
52513200 |
agaggatcaagctaaaggtgttggttgaaaatcccaagatgagtattagctagcaataaggtatagaagtgaatggaatctctagtacagtattgaaagg |
52513299 |
T |
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| Q |
101 |
aacacagttccaggtgacacccacatacctcgg |
133 |
Q |
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| T |
52513300 |
aacacagttccaggtgacacccacatacctcgg |
52513332 |
T |
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